# Difference between revisions of "Hageman:NAMICHelixPhantom"

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− | = | + | = Helical Digital DTI Phantom = |

== Overview == | == Overview == | ||

− | + | This is a software utility for creating a pure digital DTI phantom based on a user specified helix shape. One of the current challenges of DTI tractography is the lack of any ground truth with which to validate a method's results. To address this problem, we have created a digital DTI phantom that allows the user to specify all aspects of the ground truth, such as dimensions, helix shape, addition of Rician noise, etc... The program creates the shape as a volume of eigensystems and, using this, outputs the appropriate number of DWI volumes based on the number of acquisitions, b-values, and gradient directions that the user has provided. The goal of this project is to fully develop this method and make it available to the NAMIC tractography group to aid their validation efforts. | |

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== Description == | == Description == | ||

− | + | This software program creates a digital DTI phantom whose dimensions, etc... are specified by the user. The shape of the helix is defined using standard helix equations. | |

− | + | A helix is defined mathematically with the following parametric equations | |

+ | X = r cos t | ||

+ | Y = r sin t | ||

+ | Z = ct | ||

− | + | Where t is the parameterized variable and r is the radius of the helix and c is a constant giving the vertical separation of the helix’s loops. | |

− | + | The parameterized derivatives of the helix equation are used to calculate the local principal eigenvector and, with respect to t, are | |

+ | X’ = -r sin t | ||

+ | Y’ = r cos t | ||

+ | Z’ = c | ||

− | + | [[Image:NAMICSingleHelix_08-02-20.jpg|Tracts Segmenting Helix Phantom]] | |

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== Key Investigators == | == Key Investigators == | ||

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* UCLA: Arthur Toga, Ph.D | * UCLA: Arthur Toga, Ph.D | ||

− | + | Project Week Results: [[2008_Winter_Project_Week:Fluid_Mechanics_Tractography|2008 Winter]] | |

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## Latest revision as of 19:54, 21 February 2008

Home < Hageman:NAMICHelixPhantom# Helical Digital DTI Phantom

## Overview

This is a software utility for creating a pure digital DTI phantom based on a user specified helix shape. One of the current challenges of DTI tractography is the lack of any ground truth with which to validate a method's results. To address this problem, we have created a digital DTI phantom that allows the user to specify all aspects of the ground truth, such as dimensions, helix shape, addition of Rician noise, etc... The program creates the shape as a volume of eigensystems and, using this, outputs the appropriate number of DWI volumes based on the number of acquisitions, b-values, and gradient directions that the user has provided. The goal of this project is to fully develop this method and make it available to the NAMIC tractography group to aid their validation efforts.

## Description

This software program creates a digital DTI phantom whose dimensions, etc... are specified by the user. The shape of the helix is defined using standard helix equations.

A helix is defined mathematically with the following parametric equations X = r cos t Y = r sin t Z = ct

Where t is the parameterized variable and r is the radius of the helix and c is a constant giving the vertical separation of the helix’s loops.

The parameterized derivatives of the helix equation are used to calculate the local principal eigenvector and, with respect to t, are X’ = -r sin t Y’ = r cos t Z’ = c

## Key Investigators

- UCLA: Nathan Hageman
- UCLA: Arthur Toga, Ph.D

Project Week Results: 2008 Winter