Difference between revisions of "Imaging in Neuroscience"

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<font color=red>Note:
 
<font color=red>Note:
* Slide page 37: "Load scene" menu is not available in the current version of 3D Slicer (version 4.2.2). Please choose "Add data" instead.
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* Slide page 37 (For those who downloaded the slide before Apr 7): "Load scene" menu is not available in the current version of 3D Slicer (version 4.2.2). Please choose "Add data" instead.
* Slice page 48: If the white matter surface does not appear, please open "Clipping" bellow "Display" (see the screenshots bellow) and uncheck "Green Slice Clipping".  
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* Slide page 48: If the white matter surface does not appear, please select "hemisphelic_white_matter.vtk" and uncheck "Clip" (see the screenshot bellow).  
[[Image:ImagingInNeuroscience_April8_Clipping.png|200px]]
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[[Image:ImagingInNeuroscience_April8_Clipping.png|300px]]
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[http://download.slicer.org 3D Slicer 4.x (blue download button)]
 
[http://download.slicer.org 3D Slicer 4.x (blue download button)]
  
[http://www.slicer.org/slicerWiki/index.php/File:Slicer4minute.zip Slicer4minute dataset (hands-on)]
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[https://www.slicer.org/wiki/File:Slicer4minute.zip Slicer4minute dataset (hands-on)]
  
 
[[media:Dti.zip |DTI dataset (demo)]]
 
[[media:Dti.zip |DTI dataset (demo)]]
  
 
Additional materials for learning more about 3D Slicer are available on the Slicer 101 page.
 
Additional materials for learning more about 3D Slicer are available on the Slicer 101 page.

Latest revision as of 17:53, 10 July 2017

Home < Imaging in Neuroscience

The 3D Slicer software platform will be presented as part of the Harvard Catalyst course "Advanced Imaging: Imaging in Neuroscience" course organized by Dr. Randy Gollub

Course Faculty

  • Junichi Tokuda, Brigham and Women's Hospital, Harvard Medical School (Presenter)
  • Nicole Aucoin, Brigham and Women's Hospital, Harvard Medical School
  • Sonia Pujol, Brigham and Women's Hospital, Harvard Medical School
  • Randy L. Gollub, Massachusetts General Hospital, Harvard Medical School
  • P. Ellen Grant, Boston Children's Hospital, Harvard Medical School
  • Daniel Haehn, Boston Children's Hospital, Harvard Medical School
  • Nicolas Rannou, Boston Children's Hospital, Harvard Medical School
  • Nathaniel A Reynolds, Massachusetts General Hospital, Harvard Medical School

Course Logistics

Date: April 8, 2013, 11:30-12:00 Location: Sheraton Commander Hotel, Boston, MA

Agenda

  • 11:30-12:00: The 3D Slicer open-source platform for image analysis and 3D visualization of medical image data (lecture)
  • 12:00-1:00: Slicer4 minute tutorial (hands-on session) and Diffusion tractography (demo)

3D Slicer course - Imaging in Neuroscience

Note:

  • Slide page 37 (For those who downloaded the slide before Apr 7): "Load scene" menu is not available in the current version of 3D Slicer (version 4.2.2). Please choose "Add data" instead.
  • Slide page 48: If the white matter surface does not appear, please select "hemisphelic_white_matter.vtk" and uncheck "Clip" (see the screenshot bellow).

ImagingInNeuroscience April8 Clipping.png

Course Materials

In preparation for the hands-on session, please download the 3D Slicer release version 4.2.2-1 and the Slicer4 minute datasets.

3D Slicer 4.x (blue download button)

Slicer4minute dataset (hands-on)

DTI dataset (demo)

Additional materials for learning more about 3D Slicer are available on the Slicer 101 page.