Difference between revisions of "July31T-con/PlayingWithTheDiffusionData"

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(diffusion data downsampling test)
 
 
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[[Image:logfouriermagnitude.png|500px]]
 
[[Image:logfouriermagnitude.png|500px]]
 
[[Image:logfouriermagnitude-centered.png|500px]]
 
[[Image:logfouriermagnitude-centered.png|500px]]
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Unfortunately, we don't see nice blue regions that we would have expected from ideal zero-padding.
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Instead it looks a little "salt-and-peppery." Is this a scanner discretization effect?
  
 
Cutting away everything that should ideally be zero gives this Fourier log-image:
 
Cutting away everything that should ideally be zero gives this Fourier log-image:

Latest revision as of 15:58, 3 August 2007

Home < July31T-con < PlayingWithTheDiffusionData

Exploring the Upsampling of the BWH Diffusion Data

Extracting one a slice for one of the gradient directions of the diffusion data results in an image like this:

Original.png

A two-dimensional Fourier transform leads the following magnitude images (uncentered and centered):

Fouriermagnitude.png Fouriermagnitude-centered.png

Representing this in the log-domain results in

Logfouriermagnitude.png Logfouriermagnitude-centered.png

Unfortunately, we don't see nice blue regions that we would have expected from ideal zero-padding. Instead it looks a little "salt-and-peppery." Is this a scanner discretization effect?

Cutting away everything that should ideally be zero gives this Fourier log-image:

Logfouriermagnitude-centered-and-cut.png

An inverse Fourier transform followed by discretization results in:

Reconstructed.png

The result is slighly smoother than the original, which is sensible since we essentially low-pass filtered the result.

The difference between original and reconstruction is not great, but still shows a little bit of structure:

Reconstruction-diffference.png


In case you want to recreate the results. Here is the matlab script dwiTstScript.m. And here is the data SampleDWIDataSlice.tar.gz.