Difference between revisions of "NA-MIC/Projects/Collaboration/SBIA UPenn"
From NAMIC Wiki
| Line 6: | Line 6: | ||
===Key Investigators=== | ===Key Investigators=== | ||
| − | *Ragini Verma, | + | *Ragini Verma, SBIA, UPenn <Ragini.Verma@uphs.upenn.edu> |
| − | + | *Christos Davatzikos | |
| − | + | *Yang Li <Yang.Li@uphs.upenn.edu> | |
| + | *Luke Bloy <lbloy@seas.upenn.edu> | ||
<div style="margin: 20px;"> | <div style="margin: 20px;"> | ||
| Line 16: | Line 17: | ||
<h1>Objective</h1> | <h1>Objective</h1> | ||
| − | + | To incorporate into Slicer, processing and analysis methods for DTI and HARDI being developed at the Section of Biomedical Image Analysis (SBIA), UPenn [http://www.rad.upenn.edu/sbia]. The main components will be plugins for DTI registration and manifold-based statistics followed by methods for HARDI registration and statistics. | |
| − | |||
</div> | </div> | ||
| Line 24: | Line 24: | ||
<h1>Approach, Plan</h1> | <h1>Approach, Plan</h1> | ||
| − | + | *DTI registration: has been developed in SBIA over a period of 2 years, mainly using in-house code (not in ITK). This will be incorporated as a plugin. | |
| + | *DTI Statistics: SPM-like package for statistics on the full tensor. The proposed format is again a plugin as it is based on code already existing in SBIA in C, C++. | ||
| + | *HARDI registration: This is being developed in ITK, building on HARDI representation format currently under development | ||
| + | *HARDI statistics: being developed in ITK | ||
</div> | </div> | ||
| Line 31: | Line 34: | ||
<h1>Progress</h1> | <h1>Progress</h1> | ||
| − | + | *DTI Registration: plugin is ready and will be demonstrated | |
| + | To do: Replace the affine registration component, help file, speed, version control | ||
| + | *Need help with: | ||
| + | 1. General representation for registration in ITK | ||
| + | 2. Code for Demons DTI registration for comparison | ||
| + | 3. Visualization: tensor glyphs and ODFs | ||
</div> | </div> | ||
Revision as of 03:30, 18 June 2008
Home < NA-MIC < Projects < Collaboration < SBIA UPenn Return to Project Week Main Page |
Key Investigators
- Ragini Verma, SBIA, UPenn <Ragini.Verma@uphs.upenn.edu>
- Christos Davatzikos
- Yang Li <Yang.Li@uphs.upenn.edu>
- Luke Bloy <lbloy@seas.upenn.edu>
Objective
To incorporate into Slicer, processing and analysis methods for DTI and HARDI being developed at the Section of Biomedical Image Analysis (SBIA), UPenn [1]. The main components will be plugins for DTI registration and manifold-based statistics followed by methods for HARDI registration and statistics.
Approach, Plan
- DTI registration: has been developed in SBIA over a period of 2 years, mainly using in-house code (not in ITK). This will be incorporated as a plugin.
- DTI Statistics: SPM-like package for statistics on the full tensor. The proposed format is again a plugin as it is based on code already existing in SBIA in C, C++.
- HARDI registration: This is being developed in ITK, building on HARDI representation format currently under development
- HARDI statistics: being developed in ITK
Progress
- DTI Registration: plugin is ready and will be demonstrated
To do: Replace the affine registration component, help file, speed, version control
- Need help with:
1. General representation for registration in ITK 2. Code for Demons DTI registration for comparison 3. Visualization: tensor glyphs and ODFs
