Difference between revisions of "NA-MIC/Projects/NA-MIC Kit/Teem"
From NAMIC Wiki
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Back to [[NA-MIC_Collaborations|NA-MIC_Collaborations]] | Back to [[NA-MIC_Collaborations|NA-MIC_Collaborations]] | ||
| − | + | = Name of Template project goes here = | |
| − | + | Our objective is to extend the power of Slicer3 by integrating the Teem libraries and command-line tools (e.g. "unu"). | |
| − | + | = Description = | |
* Teem has been under active development since 1998, and was partially funded by [[NAC|NAC]], a collaborating project, in 2004-2006. The Teem training and dissemination efforts have leveraged the infrastructure setup by NA-MIC. | * Teem has been under active development since 1998, and was partially funded by [[NAC|NAC]], a collaborating project, in 2004-2006. The Teem training and dissemination efforts have leveraged the infrastructure setup by NA-MIC. | ||
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* Teem has been ported to the Slicer3 infrastructure and is being used as part of the Slicer3 DTI effort through the vtkTeem library, which support use of Teem I/O libraries (nrrd) and also numerical support for filtering, tractography, and analysis. | * Teem has been ported to the Slicer3 infrastructure and is being used as part of the Slicer3 DTI effort through the vtkTeem library, which support use of Teem I/O libraries (nrrd) and also numerical support for filtering, tractography, and analysis. | ||
| − | + | = Key Investigators = | |
* BWH: Gordon Kindlmann, Steve Pieper, Raul San Jose | * BWH: Gordon Kindlmann, Steve Pieper, Raul San Jose | ||
| − | + | = Links = | |
* [[TeemSummary|Teem Summary]] | * [[TeemSummary|Teem Summary]] | ||
Latest revision as of 18:53, 28 November 2007
Home < NA-MIC < Projects < NA-MIC Kit < TeemBack to NA-MIC_Collaborations
Name of Template project goes here
Our objective is to extend the power of Slicer3 by integrating the Teem libraries and command-line tools (e.g. "unu").
Description
- Teem has been under active development since 1998, and was partially funded by NAC, a collaborating project, in 2004-2006. The Teem training and dissemination efforts have leveraged the infrastructure setup by NA-MIC.
- The NRRD file format (from Teem) is the basis of the NA-MIC DWI format.
- A dashboard has been set up to monitor compiler warnings and errors on a range of operating systems, platforms and compilers.
- Starting with Slicer 2.6, Teem is included and built with Slicer. Slicer can now link with the Teem libraries, and the command-line tools are accessible from Slicer's "tkcon" window.
- 3x3 tensor eigensolutions in Slicer are now based on Teem.
- A Slicer GUI was built around Teem's tractography method to permit detailed comparison and cross-validation with Slicer's existing tractography method.
- The April 2006 Training Workshop at NIH included a section on using the "unu" and "tend" command-line tools to help import DWI and DTI into slicer.
- Teem has been ported to the Slicer3 infrastructure and is being used as part of the Slicer3 DTI effort through the vtkTeem library, which support use of Teem I/O libraries (nrrd) and also numerical support for filtering, tractography, and analysis.
Key Investigators
- BWH: Gordon Kindlmann, Steve Pieper, Raul San Jose
