Difference between revisions of "October 08 2009 Meeting: VT-NAMIC Revised atlas construction workflow"
From NAMIC Wiki
Line 14: | Line 14: | ||
# BRAINSFit initial registration -- PARAMETERS -- failure to recover the pose for Hugo and Valentino (both have severe head tilt in all three planes) | # BRAINSFit initial registration -- PARAMETERS -- failure to recover the pose for Hugo and Valentino (both have severe head tilt in all three planes) | ||
# Manual pose alignment for Hugo and Valentino | # Manual pose alignment for Hugo and Valentino | ||
+ | # Manual ICC for Tommy (Ginger, itkSNAP) | ||
+ | # Resampling of the ICC to each subject | ||
+ | # Bias field correction with ICC | ||
+ | # Pipelined registration -- problems with ICC, resampling the transform |
Revision as of 23:09, 8 October 2009
Home < October 08 2009 Meeting: VT-NAMIC Revised atlas construction workflowTODOs
- link the software tools and scripts with the workflow
- prepare a branch in the sandbox with the tools not available in Slicer (confirm with Chris copyright issues)
Software
- Slicer/extensions versioning
Workflow
- Prepare the data using the instructions -- LINK
- Gradient anisotropic diffusion -- PARAMETERS
- BRAINSFit initial registration -- PARAMETERS -- failure to recover the pose for Hugo and Valentino (both have severe head tilt in all three planes)
- Manual pose alignment for Hugo and Valentino
- Manual ICC for Tommy (Ginger, itkSNAP)
- Resampling of the ICC to each subject
- Bias field correction with ICC
- Pipelined registration -- problems with ICC, resampling the transform