OsteoMark

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  • Help Vlad get a Slicer build working. He has already sent you error logs on this, I believe. We would like to be able to get it building in Linux and Windows. He may need to come there.
    • Satus. Email instruction sent. Pending Vlad's compilation of the stable 3.6 version
  • Model maker
    • Trial on August 17, 2010
    • Mac OS 10.6.4
    • 2.8Ghz Intel Core 2 Duo
    • 4GB memory
    • Slicer 3.6 Jun 10 Stable version
    • CT data downloaded
    • 500- images
    • Loaded to Slicer
    • Editor....Threshoulding (108.79 and 2164.6), Bony structure segmented
    • Island selection...completed.
    • Save .. completed
    • Model Maker...Input VolueCT-label...Create New Model....Start label -1 End Label 1....Skinp Un-Named Labels..Joing smoothing no, smooth 10, Filter type Sin, Decimate 0.25, Split Normals Yes, Point Normals No, Save Intermediate Models
    • 40 seconds...New model created. media:Osteomark-pighead.tif
    • Status: waiting JCM to repeat the same steps.
  • See what you can learn about OsteoPlan, and locate the source code for the module. I attached a relevant paper. We are going to meet with the MGH folks to talk about what it does and what they might want to add.
  • Send us the Linux driver for the Ascension hardware.
    • Asked Lauren to put them in the sand-box.


  1. Tell us what we should be learning/reading on VTK/ITK and image file formats.