View source for Particle UNC Utah

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== Introduction ==
This training seminar has as major goal keep the scientific community up-to-date with the latest extensions of [http://www.nitrc.org/projects/shapeworks ShapeWorks], and with practical information of usage, potential applications, and future development.

==Date== 
Shape and Stats seminar series
March 16th, 2012 3pm - 4pm 

==Outline ==
# Basic particle correspondence review 
#Extensions
##Generalized correspondence
##Adaptive sampling
##Geodesic distances
##Normal consistency
##Open surfaces
##Multi-object complexes
##Regression
#Initialization methods
#Applications
#Open discusion
#Future work

==Location==
Talk will be held at Sitterson Hall, room 248 in the University of North Carolina at Chapel Hill campus, Chapel Hill (NC)

==Presenters==
*Ipek Oguz, Ph.D., University of North Carolina at Chapel Hill
*Beatriz Paniagua, Ph.D., University of North Carolina at Chapel Hill

==Talk contents(ppt)==
[https://na-mic.org/w/images/7/72/ShapeStatsParticles_Oguz_Paniagua.pdf Slides]

==Other Resources==
*  Combined SPHARM-PDM and entropybased particle systems shape correspondence methodology, B Paniagua, L Bompard, J Cates, RT Whitaker, M Datar, C Vachet, MA Styner, SPIE Medical Imaging (SPIE 2012)
*  Group-wise Automatic Mesh-based Analysis of Cortical Thickness, Vachet, C., Hazlett, H., Niethammer, M., Oguz, I., Cates, J., Whitaker, R., Piven, J., Styner, M.,  Proc. SPIE 2011
* Geometric correspondence for ensembles of nonregular shapes. M Datar, Y Gur, B Paniagua, M Styner et al. Medical Image Computing and Computer-Assisted Intervention–MICCAI 2011 (2011)
* Particle based shape regression of open surfaces with applications to developmental neuroimaging. M Datar, J Cates, P Fletcher, S Gouttard, G Gerig, R Whitaker. Medical Image Computing and Computer-Assisted Intervention–MICCAI 2009 (2009) pp. 167-174
* Particle based shape regression of open surfaces with applications to developmental neuroimaging.  Medical Image Computing and Computer-Assisted Intervention–MICCAI 2009 (2009) pp: 167–174.
* Particle-based shape analysis of multi-object complexes. J Cates, P Fletcher, M Styner, H Hazlett. Medical Image Computing and Computer-Assisted Intervention–MICCAI 2008 (2008)
* Cortical correspondence using entropy-based particle systems and local features. I Oguz, J Cates, T Fletcher, R Whitaker, D Cool, S Aylward, M Styner. Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on DOI  - 10.1109/ISBI.2008.4541327 (2008) pp. 1637-1640
* Shape modeling and analysis with entropy-based particle systems. J Cates, PT Fletcher, M Styner, M Shenton, R Whitaker. Lecture Notes in Computer Science (2007) vol. 4584 pp. 333
* Entropy-based particle systems for shape correspondence. J Cates, PT Fletcher, R Whitaker. MICCAI Workshop Mathematical Foundations of Computational Anatomy (2006) pp. 90-99
* Robust particle systems for curvature dependent sampling of implicit surfaces. M Meyer, P Georgel, R Whitaker. Shape Modeling and Applications, 2005 International Conference (2005) pp. 124 - 133

* [https://gforge.sci.utah.edu/gf/download/frsrelease/107/159/ShapeWorksManual.pdf ShapeWorks user manual]

== Particle Community ==
* Josh Cates ( cates_AT_sci.utah.edu )
* Ross Whitaker ( whitaker_AT_sci.utah.edu )
* Manasi Datar ( datar_AT_sci.utah.edu )
* Tom Fletcher ( fletcher_AT_sci.utah.edu )
* Martin Styner ( styner_AT_cs.unc.edu )
* Clement Vachet ( cvachet_AT_unc.edu, soon will move to Utah)
* Ipek Oguz ( ipek_AT_cs.unc.edu )
* Beatriz Paniagua ( beatriz_paniagua_AT_med.unc.edu )
* NA-MIC ( http://www.na-mic.org/ )