Difference between revisions of "Project Week/Template"
From NAMIC Wiki
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</gallery> | </gallery> | ||
| + | ==Instructions for Use of this Template== | ||
| + | #Please create a new wiki page with an appropriate title for your project using the convention 2013_Summer_Project_Week:<Project Name> | ||
| + | #Copy the entire text of this page into the page created above | ||
| + | #Link the created page into the list of projects for the project event | ||
| + | #Delete this section from the created page | ||
| + | #Send an email to tkapur at bwh.harvard.edu if you are stuck | ||
==Key Investigators== | ==Key Investigators== | ||
| − | * | + | * UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig |
| − | + | * Utah: Tom Fletcher, Ross Whitaker | |
| − | * Utah: | ||
<div style="margin: 20px;"> | <div style="margin: 20px;"> | ||
| Line 16: | Line 21: | ||
<h3>Objective</h3> | <h3>Objective</h3> | ||
| − | + | We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison. | |
| Line 29: | Line 34: | ||
<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
| + | Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below. The main challenge to this approach is <foo>. | ||
| + | |||
| + | Our plan for the project week is to first try out <bar>,... | ||
</div> | </div> | ||
| Line 35: | Line 43: | ||
<h3>Progress</h3> | <h3>Progress</h3> | ||
| − | + | Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure|DTI Software Infrastructure]] project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract. | |
| Line 41: | Line 49: | ||
</div> | </div> | ||
| − | == | + | ==Delivery Mechanism== |
| − | This work will be delivered to the NA-MIC Kit as a loadable | + | This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below) |
| + | |||
| + | #ITK Module | ||
| + | #Slicer Module | ||
| + | ##Built-in | ||
| + | ##Extension -- commandline | ||
| + | ##Extension -- loadable | ||
| + | #Other (Please specify) | ||
==References== | ==References== | ||
| − | * A. | + | *Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712. |
| − | + | * Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. [http://www.na-mic.org/publications/item/view/292 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104. | |
| − | + | * Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. [http://www.na-mic.org/publications/item/view/1122 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838. | |
| − | * | + | * Goodlett C, Corouge I, Jomier M, Gerig G, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 . |
| − | |||
| − | |||
Revision as of 17:32, 26 May 2013
Home < Project Week < Template
Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
Instructions for Use of this Template
- Please create a new wiki page with an appropriate title for your project using the convention 2013_Summer_Project_Week:<Project Name>
- Copy the entire text of this page into the page created above
- Link the created page into the list of projects for the project event
- Delete this section from the created page
- Send an email to tkapur at bwh.harvard.edu if you are stuck
Key Investigators
- UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
- Utah: Tom Fletcher, Ross Whitaker
Objective
We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison.
Approach, Plan
Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below. The main challenge to this approach is <foo>.
Our plan for the project week is to first try out <bar>,...
Progress
Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the DTI Software Infrastructure project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.
Delivery Mechanism
This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)
- ITK Module
- Slicer Module
- Built-in
- Extension -- commandline
- Extension -- loadable
- Other (Please specify)
References
- Fletcher P, Tao R, Jeong W, Whitaker R. A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI. Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
- Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis. Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
- Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis. Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.
- Goodlett C, Corouge I, Jomier M, Gerig G, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .
