Difference between revisions of "Project Week 25/DICOM Segmentation Support for Cornerstone and OHIF Viewer"

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(Add some useful links regarding Cornerstone and the work performed thus far on overlays / segmentation)
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==Key Investigators==
 
==Key Investigators==
 
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*Erik Ziegler (Institution)
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*Erik Ziegler (Open Health Imaging Foundation)
 
*Steve Pieper  (Isomics, Inc.)
 
*Steve Pieper  (Isomics, Inc.)
 
*Marco Nolden  (DKFZ)
 
*Marco Nolden  (DKFZ)
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|<!-- Approach and Plan bullet points -->
 
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* Review architectures and experiments so far
 
* Review architectures and experiments so far
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** SAKE viewer tool
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** SAKE viewer tool (http://sakeviewer.com/)
 
** Experiments with Segmentation read/write in javascript
 
** Experiments with Segmentation read/write in javascript
 
** Discussions and prototypes with Dana Farber
 
** Discussions and prototypes with Dana Farber
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==Illustrations==
 
==Illustrations==
  
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https://www.dropbox.com/s/alckekphljltlep/Screenshot%202017-06-17%2014.05.55.png?dl=1
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https://www.dropbox.com/s/xuo1ykyxevorhp7/Screenshot%202017-06-17%2014.08.29.png?dl=1
  
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https://www.slicer.org/img/Slicer4Announcement-HiRes.png
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==Background and References==
  
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<embedvideo service="youtube">https://www.youtube.com/watch?v=MKLWzD0PiIc</embedvideo>
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SIIM2017 Learning Lab introduction to Cornerstone / OHIF:
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https://docs.google.com/presentation/d/1O2ptf2QyF-kMslMMNyHIqXxT0uEBzMGNjeeOPYAe0ro/edit#slide=id.p30
  
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==Background and References==
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OHIF Community Forum Slides:
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<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data -->
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https://docs.google.com/presentation/d/1iYZoU7v7KHSLHiKwH1_9_wweAkG7RGnyxrWeeHva4zQ/edit#slide=id.g17e0507313_1_46
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https://docs.google.com/presentation/d/1K9Y6eP5DYTXoDlfwCZE6GkCUp83AK4_40YQS0dlzVBo/edit#slide=id.g17df770847_0_0
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Repositories
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https://github.com/chafey/cornerstone
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https://github.com/chafey/cornerstoneTools
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https://github.com/chafey/cornerstoneWADOImageLoader
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https://github.com/OHIF/Viewers
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Work thus far on segmentations / overlays in Cornerstone:
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https://github.com/chafey/cornerstone/pull/68
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https://github.com/chafey/cornerstone/pull/109
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https://rawgit.com/swederik/cornerstone/composition/example/testSeg/index.html
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http://sakeviewer.com/

Revision as of 12:12, 17 June 2017

Home < Project Week 25 < DICOM Segmentation Support for Cornerstone and OHIF Viewer


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Key Investigators

  • Erik Ziegler (Open Health Imaging Foundation)
  • Steve Pieper (Isomics, Inc.)
  • Marco Nolden (DKFZ)
  • Tina Kapur (Brigham and Women's Hospital, Harvard Medical School)

Project Description

Objective Approach and Plan Progress and Next Steps
  • Overall goal is to facilitate zero-footprint image annotation
    • Runs in browser
    • Fast and usable by clinicians
    • Interoperable (DICOM-based)
  • Cornerstone has great platform
    • Needs segmentation display
    • Needs suite of editing tools (plugin architecture)
    • Needs DICOM Segmentation object support
  • Review architectures and experiments so far
    • SAKE viewer tool (http://sakeviewer.com/)
    • Experiments with Segmentation read/write in javascript
    • Discussions and prototypes with Dana Farber
  • Try building an end-to-end proof of concept
    • Read grayscale and segmentation
    • Edit segmentation
    • Write out segmentation (store to server)
  • Discuss how to harden and integrate with production systems
  • What other work is needed

Illustrations

https://www.dropbox.com/s/alckekphljltlep/Screenshot%202017-06-17%2014.05.55.png?dl=1 https://www.dropbox.com/s/xuo1ykyxevorhp7/Screenshot%202017-06-17%2014.08.29.png?dl=1

Background and References

SIIM2017 Learning Lab introduction to Cornerstone / OHIF: https://docs.google.com/presentation/d/1O2ptf2QyF-kMslMMNyHIqXxT0uEBzMGNjeeOPYAe0ro/edit#slide=id.p30

OHIF Community Forum Slides: https://docs.google.com/presentation/d/1iYZoU7v7KHSLHiKwH1_9_wweAkG7RGnyxrWeeHva4zQ/edit#slide=id.g17e0507313_1_46 https://docs.google.com/presentation/d/1K9Y6eP5DYTXoDlfwCZE6GkCUp83AK4_40YQS0dlzVBo/edit#slide=id.g17df770847_0_0

Repositories https://github.com/chafey/cornerstone https://github.com/chafey/cornerstoneTools https://github.com/chafey/cornerstoneWADOImageLoader https://github.com/OHIF/Viewers

Work thus far on segmentations / overlays in Cornerstone:

https://github.com/chafey/cornerstone/pull/68 https://github.com/chafey/cornerstone/pull/109 https://rawgit.com/swederik/cornerstone/composition/example/testSeg/index.html http://sakeviewer.com/

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