Difference between revisions of "Project Week 25/DICOM for Quantitative Imaging and Integration with Processing Applications"

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* [https://www.dkfz.de/en/mic/team/people/Jasmin_Metzger.html Jasmin Metzger] (German Cancer Research Center (DKFZ), Germany)
 
* [https://www.dkfz.de/en/mic/team/people/Jasmin_Metzger.html Jasmin Metzger] (German Cancer Research Center (DKFZ), Germany)
 
* [http://www.spl.harvard.edu/pages/People/pieper Steve Pieper] (Isomics Inc., USA)
 
* [http://www.spl.harvard.edu/pages/People/pieper Steve Pieper] (Isomics Inc., USA)
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* [http://www.spl.harvard.edu/pages/People/fedorov Andrey Fedorov](remote) (Brigham and Women's Hospital, Harvard Medical School, USA)
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* [https://fedorov.github.io Andrey Fedorov](remote) (Brigham and Women's Hospital, Harvard Medical School, USA)
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* Jean-Christophe Fillion-Robin (Kitware)
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* [https://www.kitware.com/jean-christophe-fillion-robin/ Jean-Christophe Fillion-Robin] (Kitware, Inc., USA)
  
 
==Project Description==
 
==Project Description==
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** DICOM Segmentation (SEG) objects
 
** DICOM Segmentation (SEG) objects
 
** DICOM Parametric map (PM) objects
 
** DICOM Parametric map (PM) objects
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** Interoperability (Slicer, MITK, XNAT, Web Viewers)
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** Interaction with processing algorithms and pipelines (CLI, Docker)
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** Integration with databases (CTK DICOM Database, Elasticsearch, Postgres/XNAT)
  
 
|<!-- Approach and Plan bullet points -->
 
|<!-- Approach and Plan bullet points -->
 
* Fix packaging issues of dcmqi (see [https://github.com/QIICR/dcmqi/issues/260 dcmqi issue #260])
 
* Fix packaging issues of dcmqi (see [https://github.com/QIICR/dcmqi/issues/260 dcmqi issue #260])
 +
* Create examples of interoperability with pipelines and databases
 
* Preparing the satellite event at MICCAI 2017
 
* Preparing the satellite event at MICCAI 2017
 +
  
 
|<!-- Progress and Next steps (fill out at the end of project week), bullet points -->
 
|<!-- Progress and Next steps (fill out at the end of project week), bullet points -->
  
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* Many discussions about detailed implementation and use
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* Prototyping with cornerstone/slicer/dcmqi/mitk integration
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Next steps:
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* Load SR in MITK and finalize interoperability demonstration for MICCAI and RSNA
 
|}
 
|}
  
 
==Illustrations==
 
==Illustrations==
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<!--https://www.slicer.org/img/Slicer4Announcement-HiRes.png -->
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<gallery heights=400px mode="packed">
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Image:DICOM_QI_Slicer-read-td4.png|Slicer
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Image:DICOM_QI_MITK_td4-read-prostate.png|MITK
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</gallery>
  
 
<!--<embedvideo service="youtube">https://www.youtube.com/watch?v=MKLWzD0PiIc</embedvideo>-->
 
<!--<embedvideo service="youtube">https://www.youtube.com/watch?v=MKLWzD0PiIc</embedvideo>-->
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* [http://qiicr.org/dicom4miccai/ Tutorial satellite event at MICCAI 2017 DICOM4MICCAI]
 
* [http://qiicr.org/dicom4miccai/ Tutorial satellite event at MICCAI 2017 DICOM4MICCAI]
 
* [https://github.com/QIICR/dcmqi dcmqi] - tools to convert image analysis results into DICOM objects
 
* [https://github.com/QIICR/dcmqi dcmqi] - tools to convert image analysis results into DICOM objects
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* [http://qiicr.org/dcmqi-guide/tutorials/intro.html dcmqi self-guided video tutorials]
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* [https://qiicr.gitbooks.io/dicom4qi DICOM4QI: DICOM for Quantitative Imaging demonstration and connectathon at RSNA]

Latest revision as of 12:36, 30 June 2017

Home < Project Week 25 < DICOM for Quantitative Imaging and Integration with Processing Applications


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Key Investigators

Project Description

Objective Approach and Plan Progress and Next Steps
  • Discuss topics related to using the DICOM standard for storing results of quantitative image analysis
    • DICOM Structured Reports (SR)
    • DICOM Segmentation (SEG) objects
    • DICOM Parametric map (PM) objects
    • Interoperability (Slicer, MITK, XNAT, Web Viewers)
    • Interaction with processing algorithms and pipelines (CLI, Docker)
    • Integration with databases (CTK DICOM Database, Elasticsearch, Postgres/XNAT)
  • Fix packaging issues of dcmqi (see dcmqi issue #260)
  • Create examples of interoperability with pipelines and databases
  • Preparing the satellite event at MICCAI 2017
  • Many discussions about detailed implementation and use
  • Prototyping with cornerstone/slicer/dcmqi/mitk integration

Next steps:

  • Load SR in MITK and finalize interoperability demonstration for MICCAI and RSNA

Illustrations

  • Slicer

  • MITK


Background and References

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