Difference between revisions of "Projects/Diffusion/2007 Project Week Slicer 3 Whole Brain Seeding"

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|[[Image:SeedingInterface.png|thumb|320px|Return to [[2007_Programming/Project_Week_MIT|Project Week Main Page]] ]]
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|[[Image:DtiDevel2.jpg|thumb|320px|Slicer 3 tractography display.]]
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<h1>Progress</h1>
 
<h1>Progress</h1>
  
Software for the fiber tracking has been ported and interfaces has been updated to VTK 5. The command line module has been designed and fiber mrml bundles have been incorporated to the XML description (joint collaboration with Casey Goodlett).
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* Software for the fiber tracking has been ported and interfaces has been updated to VTK 5.  
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* The command line module has been developed and fiber mrml bundles have been incorporated to the XML description (joint collaboration with Casey Goodlett).
 +
* Collaboration with parties involved in Diffusion Imaging to facilitate the incorporation of diffusion tools.
 +
* Design decision has been made to incorporate basic display logic into DisplayMRMLNodes to meet needs across projects and improve performance.
  
 
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Latest revision as of 14:15, 29 June 2007

Home < Projects < Diffusion < 2007 Project Week Slicer 3 Whole Brain Seeding
Slicer 3 tractography display.


Key Investigators

  • BWH: Raul San Jose, Lauren O'Donnell, Alex Yarmarkovich


Objective

Deployment of whole brain seeding: data structure, fiber tracking and fast query mechanism to support editing operation and ROI-based fiber selection.

Approach, Plan

Our approach is to port the Streamline techniques used in Slicer 2 as a Command Line Module. We plan on looking at a optimal memory representation of a full brain tractography set for optimal querying and retrival of specific fibers according to spatial locations.

Progress

  • Software for the fiber tracking has been ported and interfaces has been updated to VTK 5.
  • The command line module has been developed and fiber mrml bundles have been incorporated to the XML description (joint collaboration with Casey Goodlett).
  • Collaboration with parties involved in Diffusion Imaging to facilitate the incorporation of diffusion tools.
  • Design decision has been made to incorporate basic display logic into DisplayMRMLNodes to meet needs across projects and improve performance.



References