Difference between revisions of "Projects/Diffusion/2007 Project Week Slicer 3 Whole Brain Seeding"
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|[[Image:ProjectWeek-2007.png|thumb|320px|Return to [[2007_Programming/Project_Week_MIT|Project Week Main Page]] ]] | |[[Image:ProjectWeek-2007.png|thumb|320px|Return to [[2007_Programming/Project_Week_MIT|Project Week Main Page]] ]] | ||
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<h1>Objective</h1> | <h1>Objective</h1> | ||
− | Deployment of whole brain seeding: data structure, fiber tracking and fast query mechanism. | + | Deployment of whole brain seeding: data structure, fiber tracking and fast query mechanism to support editing operation and ROI-based fiber selection. |
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<h1>Approach, Plan</h1> | <h1>Approach, Plan</h1> | ||
− | Our approach is to | + | Our approach is to port the Streamline techniques used in Slicer 2 as a Command Line Module. |
+ | We plan on looking at a optimal memory representation of a full brain tractography set for optimal querying and retrival of specific fibers according to spatial locations. | ||
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− | Software for the fiber tracking and | + | * Software for the fiber tracking has been ported and interfaces has been updated to VTK 5. |
+ | * The command line module has been developed and fiber mrml bundles have been incorporated to the XML description (joint collaboration with Casey Goodlett). | ||
+ | * Collaboration with parties involved in Diffusion Imaging to facilitate the incorporation of diffusion tools. | ||
+ | * Design decision has been made to incorporate basic display logic into DisplayMRMLNodes to meet needs across projects and improve performance. | ||
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Latest revision as of 14:15, 29 June 2007
Home < Projects < Diffusion < 2007 Project Week Slicer 3 Whole Brain Seeding
Key Investigators
- BWH: Raul San Jose, Lauren O'Donnell, Alex Yarmarkovich
Objective
Deployment of whole brain seeding: data structure, fiber tracking and fast query mechanism to support editing operation and ROI-based fiber selection.
Approach, Plan
Our approach is to port the Streamline techniques used in Slicer 2 as a Command Line Module. We plan on looking at a optimal memory representation of a full brain tractography set for optimal querying and retrival of specific fibers according to spatial locations.
Progress
- Software for the fiber tracking has been ported and interfaces has been updated to VTK 5.
- The command line module has been developed and fiber mrml bundles have been incorporated to the XML description (joint collaboration with Casey Goodlett).
- Collaboration with parties involved in Diffusion Imaging to facilitate the incorporation of diffusion tools.
- Design decision has been made to incorporate basic display logic into DisplayMRMLNodes to meet needs across projects and improve performance.