Difference between revisions of "Projects:ARRA:SlicerEM:AtlasCreator:Tests"

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== Atlas Creator Tests ==
 
== Atlas Creator Tests ==
 +
Successful tests running the Atlas Creator are shown here.
  
 
=== 01: Fixed with CMTK on 6 Cases ===
 
=== 01: Fixed with CMTK on 6 Cases ===
Line 11: Line 12:
 
* Template Type: Fixed
 
* Template Type: Fixed
 
* Toolkit: CMTK
 
* Toolkit: CMTK
 +
* Registration Type: Affine
 
* Runtime: 11 minutes
 
* Runtime: 11 minutes
  
Line 27: Line 29:
 
Image:01exampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
 
Image:01exampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
 
Image:01exampleBeforeAndAfter2.png|Checkerboard: Before-Template and After-Template 2
 
Image:01exampleBeforeAndAfter2.png|Checkerboard: Before-Template and After-Template 2
−
</gallery>
 
−
 
−
 
−
=== 02: Fixed with BRAINSFit on 6 Cases ===
 
−
* Machine: ?
 
−
** CPU: ?
 
−
** RAM: ?
 
−
** OS: ?
 
−
** AtlasCreator Version: 0.21
 
−
 
−
* No. of Cases: 6 (5 against 1 template)
 
−
* Template Type: Fixed
 
−
* Toolkit: BRAINSFit
 
−
* Runtime: XX minutes
 
−
 
−
* Log: [[File:02Log.txt]]
 
−
* MRML Scene: [[File:02brainsfitFixed.zip]]
 
−
 
−
<gallery>
 
−
Image:02template.png|Fixed Template
 
−
Image:02atlas.png|Combined Atlas output
 
−
Image:02atlas3.png|Atlas for label 3 output
 
−
Image:02atlas4.png|Atlas for label 4 output
 
−
Image:02atlas5.png|Atlas for label 5 output
 
−
Image:02atlas6.png|Atlas for label 6 output
 
−
Image:02atlas8.png|Atlas for label 8 output
 
−
Image:02atlas10.png|Atlas for label 10 output
 
−
Image:02exampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
 
−
Image:02exampleBeforeAndAfter2.png|Checkerboard: Before-Template and After-Template 2
 
 
</gallery>
 
</gallery>
  
Line 70: Line 43:
 
* Iterations: 2
 
* Iterations: 2
 
* Toolkit: CMTK
 
* Toolkit: CMTK
 +
* Registration Type: Affine
 
* Runtime: 28 minutes
 
* Runtime: 28 minutes
  
Line 76: Line 50:
  
 
<gallery>
 
<gallery>
−
Image:03Template.png|Fixed Template
+
Image:03Template.png|Dynamic Template
 
Image:03Atlas.png|Combined Atlas output
 
Image:03Atlas.png|Combined Atlas output
 
Image:atlas3.png|Atlas for label 3 output
 
Image:atlas3.png|Atlas for label 3 output
Line 84: Line 58:
 
Image:atlas7.png|Atlas for label 7 output
 
Image:atlas7.png|Atlas for label 7 output
 
Image:atlas8.png|Atlas for label 8 output
 
Image:atlas8.png|Atlas for label 8 output
 +
Image:atlas9.png|Atlas for label 9 output
 
Image:atlas10.png|Atlas for label 10 output
 
Image:atlas10.png|Atlas for label 10 output
 
Image:atlas31.png|Atlas for label 31 output
 
Image:atlas31.png|Atlas for label 31 output
Line 101: Line 76:
 
* Iterations: 2
 
* Iterations: 2
 
* Toolkit: BRAINSFit
 
* Toolkit: BRAINSFit
 +
* Registration Type: Affine
 
* Runtime: 64 minutes
 
* Runtime: 64 minutes
  
Line 107: Line 83:
  
 
<gallery>
 
<gallery>
−
Image:04Template.png|Fixed Template
+
Image:04Template.png|Dynamic Template
 
Image:04Atlas.png|Combined Atlas output
 
Image:04Atlas.png|Combined Atlas output
 
Image:04Atlas3.png|Atlas for label 3 output
 
Image:04Atlas3.png|Atlas for label 3 output
Line 113: Line 89:
 
Image:04Atlas5.png|Atlas for label 5 output
 
Image:04Atlas5.png|Atlas for label 5 output
 
Image:04Atlas6.png|Atlas for label 6 output
 
Image:04Atlas6.png|Atlas for label 6 output
 +
Image:04Atlas7.png|Atlas for label 7 output
 
Image:04Atlas8.png|Atlas for label 8 output
 
Image:04Atlas8.png|Atlas for label 8 output
 +
Image:04Atlas9.png|Atlas for label 9 output
 
Image:04Atlas10.png|Atlas for label 10 output
 
Image:04Atlas10.png|Atlas for label 10 output
 +
Image:04Atlas31.png|Atlas for label 31 output
 +
Image:04Atlas32.png|Atlas for label 32 output
 
Image:04ExampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
 
Image:04ExampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
 +
</gallery>
 +
 +
 +
=== 05: Fixed with CMTK on 50 Cases ===
 +
* Machine: b2-t74-3
 +
** CPU: 4x Xeon 3 GHz
 +
** RAM: 32 GB
 +
** OS: Linux 64
 +
** AtlasCreator Version: 0.21
 +
 +
* No. of Cases: 50 (49 against 1 template), skull-stripped + bias corrected
 +
* Template Type: Fixed
 +
* Toolkit: CMTK
 +
* Registration Type: Affine
 +
* Runtime: 162 minutes
 +
 +
* Log: [[File:05CmtkFixed.txt]]
 +
* MRML Scene: [[File:05cmtkFixed.zip]]
 +
 +
<gallery>
 +
Image:05template.png|Fixed Template
 +
Image:05atlas.png|Combined Atlas output
 +
Image:05atlas3.png|Atlas for label 3 output
 +
Image:05atlas4.png|Atlas for label 4 output
 +
Image:05atlas5.png|Atlas for label 5 output
 +
Image:05atlas6.png|Atlas for label 6 output
 +
Image:05atlas7.png|Atlas for label 7 output
 +
Image:05atlas8.png|Atlas for label 8 output
 +
Image:05atlas9.png|Atlas for label 9 output
 +
Image:05atlas10.png|Atlas for label 10 output
 +
Image:05atlas31.png|Atlas for label 31 output
 +
Image:05atlas32.png|Atlas for label 32 output
 +
Image:05exampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
 +
</gallery>
 +
 +
 +
=== 06: Fixed with BRAINSFit on 50 Cases ===
 +
* Machine: b2-t74-3
 +
** CPU: 4x Xeon 3 GHz
 +
** RAM: 32 GB
 +
** OS: Linux 64
 +
** AtlasCreator Version: 0.21
 +
 +
* No. of Cases: 50 (49 against 1 template), skull-stripped + bias corrected
 +
* Template Type: Fixed
 +
* Toolkit: BRAINSFit
 +
* Registration Type: Affine
 +
* Runtime: 241 minutes
 +
 +
* Log: [[File:06brainsfitFixed.txt]]
 +
* MRML Scene: [[File:06brainsfitFixed.zip]]
 +
 +
<gallery>
 +
Image:06template.png|Fixed Template
 +
Image:06atlas.png|Combined Atlas output
 +
Image:06atlas3.png|Atlas for label 3 output
 +
Image:06atlas4.png|Atlas for label 4 output
 +
Image:06atlas5.png|Atlas for label 5 output
 +
Image:06atlas6.png|Atlas for label 6 output
 +
Image:06atlas7.png|Atlas for label 7 output
 +
Image:06atlas8.png|Atlas for label 8 output
 +
Image:06atlas9.png|Atlas for label 9 output
 +
Image:06atlas10.png|Atlas for label 10 output
 +
Image:06atlas31.png|Atlas for label 31 output
 +
Image:06atlas32.png|Atlas for label 32 output
 +
Image:06exampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
 +
</gallery>
 +
 +
 +
=== 07: Dynamic with BRAINSFit on 50 Cases ===
 +
* Machine: b2-t74-3
 +
** CPU: 4x Xeon 3 GHz
 +
** RAM: 32 GB
 +
** OS: Linux 64
 +
** AtlasCreator Version: 0.21
 +
 +
* No. of Cases: 50
 +
* Template Type: Dynamic
 +
* Iterations: 5
 +
* Toolkit: BRAINSFit
 +
* Registration Type: Affine
 +
* Runtime: 1244 minutes (< 24h)
 +
 +
* Log: [[File:07brainsfitDynamic.txt]]
 +
* MRML Scene: [[File:07brainsfitDynamic.zip]]
 +
 +
<gallery>
 +
Image:07template.png|Dynamic Template
 +
Image:07atlas.png|Combined Atlas output
 +
Image:07atlas3.png|Atlas for label 3 output
 +
Image:07atlas4.png|Atlas for label 4 output
 +
Image:07atlas5.png|Atlas for label 5 output
 +
Image:07atlas6.png|Atlas for label 6 output
 +
Image:07atlas7.png|Atlas for label 7 output
 +
Image:07atlas8.png|Atlas for label 8 output
 +
Image:07atlas9.png|Atlas for label 9 output
 +
Image:07atlas10.png|Atlas for label 10 output
 +
Image:07atlas31.png|Atlas for label 31 output
 +
Image:07atlas32.png|Atlas for label 32 output
 +
Image:07exampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
 +
</gallery>
 +
 +
=== 08: Dynamic with CMTK on 50 Cases ===
 +
* Machine: b2-t74-1
 +
** CPU: 4x Xeon 3 GHz
 +
** RAM: 32 GB
 +
** OS: Linux 64
 +
** AtlasCreator Version: 0.21
 +
 +
* No. of Cases: 50
 +
* Template Type: Dynamic
 +
* Iterations: 5
 +
* Toolkit: CMTK
 +
* Registration Type: Affine
 +
* Runtime: 3099 minutes (>48 h)
 +
 +
* Log: [[File:08cmtkDynamic.txt]]
 +
* MRML Scene: [[File:08cmtkDynamic.zip]]
 +
 +
<gallery>
 +
Image:08template.png|Dynamic Template
 +
Image:08atlas.png|Combined Atlas output
 +
Image:08atlas3.png|Atlas for label 3 output
 +
Image:08atlas4.png|Atlas for label 4 output
 +
Image:08atlas5.png|Atlas for label 5 output
 +
Image:08atlas6.png|Atlas for label 6 output
 +
Image:08atlas7.png|Atlas for label 7 output
 +
Image:08atlas8.png|Atlas for label 8 output
 +
Image:08atlas9.png|Atlas for label 9 output
 +
Image:08atlas10.png|Atlas for label 10 output
 +
Image:08atlas31.png|Atlas for label 31 output
 +
Image:08atlas32.png|Atlas for label 32 output
 +
Image:08exampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
 
</gallery>
 
</gallery>

Latest revision as of 16:24, 21 March 2011

Home < Projects:ARRA:SlicerEM:AtlasCreator:Tests

Atlas Creator Tests

Successful tests running the Atlas Creator are shown here.

01: Fixed with CMTK on 6 Cases

  • Machine: b2-t74-2
    • CPU: 4x Xeon 3 GHz
    • RAM: 32 GB
    • OS: Linux 64
    • AtlasCreator Version: 0.21
  • No. of Cases: 6 (5 against 1 template)
  • Template Type: Fixed
  • Toolkit: CMTK
  • Registration Type: Affine
  • Runtime: 11 minutes

  • Fixed Template

  • Combined Atlas output

  • Atlas for label 3 output

  • Atlas for label 4 output

  • Atlas for label 5 output

  • Atlas for label 6 output

  • Atlas for label 8 output

  • Atlas for label 10 output

  • Checkerboard: Before-Template and After-Template

  • Checkerboard: Before-Template and After-Template 2


03: Dynamic with CMTK on 6 Cases

  • Machine: sbia-pc66
    • CPU: 4x Core i7 2.66 GHz
    • RAM: 8 GB
    • OS: Mac OS X Snow Leopard
    • AtlasCreator Version: 0.21
  • No. of Cases: 6
  • Template Type: Dynamic
  • Iterations: 2
  • Toolkit: CMTK
  • Registration Type: Affine
  • Runtime: 28 minutes

  • Dynamic Template

  • Combined Atlas output

  • Atlas for label 3 output

  • Atlas for label 4 output

  • Atlas for label 5 output

  • Atlas for label 6 output

  • Atlas for label 7 output

  • Atlas for label 8 output

  • Atlas for label 9 output

  • Atlas for label 10 output

  • Atlas for label 31 output

  • Atlas for label 32 output

  • Checkerboard: Before-Template and After-Template

04: Dynamic with BRAINSFit on 6 Cases

  • Machine: sbia-pc66
    • CPU: 4x Core i7 2.66 GHz
    • RAM: 8 GB
    • OS: Mac OS X Snow Leopard
    • AtlasCreator Version: 0.21
  • No. of Cases: 6
  • Template Type: Dynamic
  • Iterations: 2
  • Toolkit: BRAINSFit
  • Registration Type: Affine
  • Runtime: 64 minutes

  • Dynamic Template

  • Combined Atlas output

  • Atlas for label 3 output

  • Atlas for label 4 output

  • Atlas for label 5 output

  • Atlas for label 6 output

  • Atlas for label 7 output

  • Atlas for label 8 output

  • Atlas for label 9 output

  • Atlas for label 10 output

  • Atlas for label 31 output

  • Atlas for label 32 output

  • Checkerboard: Before-Template and After-Template


05: Fixed with CMTK on 50 Cases

  • Machine: b2-t74-3
    • CPU: 4x Xeon 3 GHz
    • RAM: 32 GB
    • OS: Linux 64
    • AtlasCreator Version: 0.21
  • No. of Cases: 50 (49 against 1 template), skull-stripped + bias corrected
  • Template Type: Fixed
  • Toolkit: CMTK
  • Registration Type: Affine
  • Runtime: 162 minutes

  • Fixed Template

  • Combined Atlas output

  • Atlas for label 3 output

  • Atlas for label 4 output

  • Atlas for label 5 output

  • Atlas for label 6 output

  • Atlas for label 7 output

  • Atlas for label 8 output

  • Atlas for label 9 output

  • Atlas for label 10 output

  • Atlas for label 31 output

  • Atlas for label 32 output

  • Checkerboard: Before-Template and After-Template


06: Fixed with BRAINSFit on 50 Cases

  • Machine: b2-t74-3
    • CPU: 4x Xeon 3 GHz
    • RAM: 32 GB
    • OS: Linux 64
    • AtlasCreator Version: 0.21
  • No. of Cases: 50 (49 against 1 template), skull-stripped + bias corrected
  • Template Type: Fixed
  • Toolkit: BRAINSFit
  • Registration Type: Affine
  • Runtime: 241 minutes

  • Fixed Template

  • Combined Atlas output

  • Atlas for label 3 output

  • Atlas for label 4 output

  • Atlas for label 5 output

  • Atlas for label 6 output

  • Atlas for label 7 output

  • Atlas for label 8 output

  • Atlas for label 9 output

  • Atlas for label 10 output

  • Atlas for label 31 output

  • Atlas for label 32 output

  • Checkerboard: Before-Template and After-Template


07: Dynamic with BRAINSFit on 50 Cases

  • Machine: b2-t74-3
    • CPU: 4x Xeon 3 GHz
    • RAM: 32 GB
    • OS: Linux 64
    • AtlasCreator Version: 0.21
  • No. of Cases: 50
  • Template Type: Dynamic
  • Iterations: 5
  • Toolkit: BRAINSFit
  • Registration Type: Affine
  • Runtime: 1244 minutes (< 24h)

  • Dynamic Template

  • Combined Atlas output

  • Atlas for label 3 output

  • Atlas for label 4 output

  • Atlas for label 5 output

  • Atlas for label 6 output

  • Atlas for label 7 output

  • Atlas for label 8 output

  • Atlas for label 9 output

  • Atlas for label 10 output

  • Atlas for label 31 output

  • Atlas for label 32 output

  • Checkerboard: Before-Template and After-Template

08: Dynamic with CMTK on 50 Cases

  • Machine: b2-t74-1
    • CPU: 4x Xeon 3 GHz
    • RAM: 32 GB
    • OS: Linux 64
    • AtlasCreator Version: 0.21
  • No. of Cases: 50
  • Template Type: Dynamic
  • Iterations: 5
  • Toolkit: CMTK
  • Registration Type: Affine
  • Runtime: 3099 minutes (>48 h)

  • Dynamic Template

  • Combined Atlas output

  • Atlas for label 3 output

  • Atlas for label 4 output

  • Atlas for label 5 output

  • Atlas for label 6 output

  • Atlas for label 7 output

  • Atlas for label 8 output

  • Atlas for label 9 output

  • Atlas for label 10 output

  • Atlas for label 31 output

  • Atlas for label 32 output

  • Checkerboard: Before-Template and After-Template

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