Difference between revisions of "Projects:QIN:3D Slicer Annotation Image Markup:Standard Terminology"
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=Proposed approach for Slicer LUT terminology mapping= | =Proposed approach for Slicer LUT terminology mapping= | ||
| − | + | 1. Start with the GeneralAnatomy LUT (see here: http://www.slicer.org/slicerWiki/index.php/Slicer3:2010_GenericAnatomyColors) | |
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| − | + | 2. Using RadLex browser, identify General Anatomy, Segmented Property Category and Segmented Property Type codes (using the hierarchy) for a subset of the GeneralAnatomy LUT entries | |
| + | |||
| + | 3. Inherit RGB colors from LUT (note that Segmentation objects allow to encode recommended display color in "Recommended Display CIELab Value" (0062,000D) attribute; these values are encoded in [http://en.wikipedia.org/wiki/Lab_color_space CIALab]). | ||
Revision as of 15:50, 12 September 2012
Home < Projects:QIN:3D Slicer Annotation Image Markup:Standard TerminologyThis is a collection of relevant pieces from:
Contents
Segmentation image module attributes
Segmentation image module attributes must in particular include the following (PS 3.3-2011, p.989):
Code sequence attributes
General Anatomy Macro
The General Anatomy Macro is defined as follows (PS 3.3-2011, p.96):
Coding Scheme Designators
NOTE: this table is incomplete, consult PS 3.16-2011 p.43.
RadLex
- General information: http://rsna.org/RadLex.aspx
- License: http://rsna.org/uploadedFiles/RSNA/Content/Informatics/radlex_public_license_version_1-0-1.pdf
- Example hierarchy of the term mapping from RadLex browser (liver: http://www.radlex.org/RID/RID13419):
Proposed approach for Slicer LUT terminology mapping
1. Start with the GeneralAnatomy LUT (see here: http://www.slicer.org/slicerWiki/index.php/Slicer3:2010_GenericAnatomyColors)
2. Using RadLex browser, identify General Anatomy, Segmented Property Category and Segmented Property Type codes (using the hierarchy) for a subset of the GeneralAnatomy LUT entries
3. Inherit RGB colors from LUT (note that Segmentation objects allow to encode recommended display color in "Recommended Display CIELab Value" (0062,000D) attribute; these values are encoded in CIALab).
