Difference between revisions of "Projects:QIN:3D Slicer Annotation Image Markup:Standard Terminology"

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David Clunie in email communication Sept 17, 2012:
 
David Clunie in email communication Sept 17, 2012:
 
<pre>
 
<pre>
he agreement with SNOMED
+
[...] The [DICOM] agreement with SNOMED
is ti allow any implementer to use the terms included in DICOM in their
+
is to allow any implementer to use the terms included in DICOM in their
 
implementations and products without fee; it is not just to be able to
 
implementations and products without fee; it is not just to be able to
 
include them in the text of the standard documents.
 
include them in the text of the standard documents.
  
So, since Sliver would be using the concepts to include in a DICOM SEG
+
So, since Slicer would be using the concepts to include in a DICOM SEG
 
object, you do not need any additional agreement, nor any agreement with
 
object, you do not need any additional agreement, nor any agreement with
 
SNOMED to distribute the source code (my PixelMed Java DICOM toolkit is
 
SNOMED to distribute the source code (my PixelMed Java DICOM toolkit is
Line 52: Line 52:
 
</pre>
 
</pre>
  
=Mapping Slicer GeneralAnatomy LUT to Standard Terminology (work in progress)=
+
Notes on choosing SNOMED concepts when fleshing out the table, esp. regarding
Original GeneralAnatomy LUT see here: http://www.slicer.org/slicerWiki/index.php/Slicer3:2010_GenericAnatomyColors
+
anatomy. Make sure that you choose "(body structure)" concepts for anatomy,
 +
and that you pick the "entire ..." concept rather than "structure of" etc.,
 +
and if the choice is not obvious, include about your choice so that these can
 +
be flagged for special attention during review.
  
{| class="wikitable sortable labelpage labelpagetable" border="1"
+
One way to find the right SNOMED code without using one of the terminology
! integer_label
+
browsers is just to download the text files from the UMLS (from
! text_label
+
http://www.nlm.nih.gov/research/umls/licensedcontent/snomedctfiles.html). You
! color
+
will need to register and get a user name and password.
! notes
 
! anatomic region
 
! anatomic region modifier
 
! primary anatomic structure
 
! primary anatomic structure modifier
 
! segmented property category - CID 7150
 
! segmented property type
 
! segmented property type modifier
 
|-
 
|0
 
|background
 
|style="background:rgb(0,0,0);color:white"|rgba(0,0,0,0)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|1
 
|tissue
 
|style="background:rgb(128,174,128)"|rgb(128,174,128)
 
| Default label for bodily tissues
 
|-
 
|2
 
|bone
 
|style="background:rgb(241,214,145)"|rgb(241,214,145)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|3
 
|skin
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|4
 
|connective tissue
 
|style="background:rgb(111,184,210)"|rgb(111,184,210)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|5
 
|blood
 
|style="background:rgb(216,101,79)"|rgb(216,101,79)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|6
 
|organ
 
|style="background:rgb(221,130,101)"|rgb(221,130,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|7
 
|mass
 
|style="background:rgb(144,238,144)"|rgb(144,238,144)
 
| Could be tumor or other lesion
 
|-
 
|8
 
|muscle
 
|style="background:rgb(192,104,88)"|rgb(192,104,88)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|9
 
|foreign object
 
|style="background:rgb(220,245,20)"|rgb(220,245,20)
 
| Implants, surical instruments, table...
 
|-
 
|10
 
|waste
 
|style="background:rgb(78,63,0)"|rgb(78,63,0)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|11
 
|teeth
 
|style="background:rgb(255,250,220)"|rgb(255,250,220)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|12
 
|fat
 
|style="background:rgb(230,220,70)"|rgb(230,220,70)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|13
 
|gray matter
 
|style="background:rgb(200,200,235)"|rgb(200,200,235)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|14
 
|white matter
 
|style="background:rgb(250,250,210)"|rgb(250,250,210)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|15
 
|nerve
 
|style="background:rgb(244,214,49)"|rgb(244,214,49)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|16
 
|vein
 
|style="background:rgb(0,151,206)"|rgb(0,151,206)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|17
 
|artery
 
|style="background:rgb(216,101,79)"|rgb(216,101,79)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|18
 
|capillary
 
|style="background:rgb(183,156,220)"|rgb(183,156,220)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|19
 
|ligament
 
|style="background:rgb(183,214,211)"|rgb(183,214,211)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|20
 
|tendon
 
|style="background:rgb(152,189,207)"|rgb(152,189,207)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|21
 
|cartilage
 
|style="background:rgb(111,184,210)"|rgb(111,184,210)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|22
 
|meniscus
 
|style="background:rgb(178,212,242)"|rgb(178,212,242)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|23
 
|lymph node
 
|style="background:rgb(68,172,100)"|rgb(68,172,100)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|24
 
|lymphatic vessel
 
|style="background:rgb(111,197,131)"|rgb(111,197,131)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|25
 
|cerebro-spinal fluid
 
|style="background:rgb(85,188,255)"|rgb(85,188,255)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|26
 
|bile
 
|style="background:rgb(0,145,30)"|rgb(0,145,30)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|27
 
|urine
 
|style="background:rgb(214,230,130)"|rgb(214,230,130)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|28
 
|feces
 
|style="background:rgb(78,63,0)"|rgb(78,63,0)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|29
 
|gas
 
|style="background:rgb(218,255,255)"|rgb(218,255,255)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|30
 
|fluid
 
|style="background:rgb(170,250,250)"|rgb(170,250,250)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|31
 
|edema
 
|style="background:rgb(140,224,228)"|rgb(140,224,228)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|32
 
|bleeding
 
|style="background:rgb(188,65,28)"|rgb(188,65,28)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|33
 
|necrosis
 
|style="background:rgb(216,191,216)"|rgb(216,191,216)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|34
 
|clot
 
|style="background:rgb(145,60,66)"|rgb(145,60,66)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|35
 
|embolism
 
|style="background:rgb(150,98,83)"|rgb(150,98,83)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|36
 
|head
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|37
 
|central nervous system
 
|style="background:rgb(244,214,49)"|rgb(244,214,49)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|38
 
|brain
 
|style="background:rgb(250,250,225)"|rgb(250,250,225)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|39
 
|gray matter of brain
 
|style="background:rgb(200,200,215)"|rgb(200,200,215)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|40
 
|telencephalon
 
|style="background:rgb(68,131,98)"|rgb(68,131,98)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|41
 
|cerebral cortex
 
|style="background:rgb(128,174,128)"|rgb(128,174,128)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|42
 
|right frontal lobe
 
|style="background:rgb(83,146,164)"|rgb(83,146,164)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|43
 
|left frontal lobe
 
|style="background:rgb(83,146,164)"|rgb(83,146,164)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|44
 
|right temporal lobe
 
|style="background:rgb(162,115,105)"|rgb(162,115,105)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|45
 
|left temporal lobe
 
|style="background:rgb(162,115,105)"|rgb(162,115,105)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|46
 
|right parietal lobe
 
|style="background:rgb(141,93,137)"|rgb(141,93,137)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|47
 
|left parietal lobe
 
|style="background:rgb(141,93,137)"|rgb(141,93,137)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|48
 
|right occipital lobe
 
|style="background:rgb(182,166,110)"|rgb(182,166,110)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|49
 
|left occipital lobe
 
|style="background:rgb(182,166,110)"|rgb(182,166,110)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|50
 
|right insular lobe
 
|style="background:rgb(188,135,166)"|rgb(188,135,166)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|51
 
|left insular lobe
 
|style="background:rgb(188,135,166)"|rgb(188,135,166)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|52
 
|right limbic lobe
 
|style="background:rgb(154,150,201)"|rgb(154,150,201)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|53
 
|left limbic lobe
 
|style="background:rgb(154,150,201)"|rgb(154,150,201)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|54
 
|right striatum
 
|style="background:rgb(177,140,190)"|rgb(177,140,190)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|55
 
|left striatum
 
|style="background:rgb(177,140,190)"|rgb(177,140,190)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|56
 
|right caudate nucleus
 
|style="background:rgb(30,111,85)"|rgb(30,111,85)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|57
 
|left caudate nucleus
 
|style="background:rgb(30,111,85)"|rgb(30,111,85)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|58
 
|right putamen
 
|style="background:rgb(210,157,166)"|rgb(210,157,166)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|59
 
|left putamen
 
|style="background:rgb(210,157,166)"|rgb(210,157,166)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|60
 
|right pallidum
 
|style="background:rgb(48,129,126)"|rgb(48,129,126)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|61
 
|left pallidum
 
|style="background:rgb(48,129,126)"|rgb(48,129,126)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|62
 
|right amygdaloid complex
 
|style="background:rgb(98,153,112)"|rgb(98,153,112)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|63
 
|left amygdaloid complex
 
|style="background:rgb(98,153,112)"|rgb(98,153,112)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|64
 
|diencephalon
 
|style="background:rgb(69,110,53)"|rgb(69,110,53)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|65
 
|thalamus
 
|style="background:rgb(166,113,137)"|rgb(166,113,137)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|66
 
|right thalamus
 
|style="background:rgb(122,101,38)"|rgb(122,101,38)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|67
 
|left thalamus
 
|style="background:rgb(122,101,38)"|rgb(122,101,38)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|68
 
|pineal gland
 
|style="background:rgb(253,135,192)"|rgb(253,135,192)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|69
 
|midbrain
 
|style="background:rgb(145,92,109)"|rgb(145,92,109)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|70
 
|substantia nigra
 
|style="background:rgb(46,101,131)"|rgb(46,101,131)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|71
 
|right substantia nigra
 
|style="background:rgb(0,108,112)"|rgb(0,108,112)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|72
 
|left substantia nigra
 
|style="background:rgb(0,108,112)"|rgb(0,108,112)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|73
 
|cerebral white matter
 
|style="background:rgb(250,250,225)"|rgb(250,250,225)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|74
 
|right superior longitudinal fasciculus
 
|style="background:rgb(127,150,88)"|rgb(127,150,88)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|75
 
|left superior longitudinal fasciculus
 
|style="background:rgb(127,150,88)"|rgb(127,150,88)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|76
 
|right inferior longitudinal fasciculus
 
|style="background:rgb(159,116,163)"|rgb(159,116,163)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|77
 
|left inferior longitudinal fasciculus
 
|style="background:rgb(159,116,163)"|rgb(159,116,163)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|78
 
|right arcuate fasciculus
 
|style="background:rgb(125,102,154)"|rgb(125,102,154)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|79
 
|left arcuate fasciculus
 
|style="background:rgb(125,102,154)"|rgb(125,102,154)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|80
 
|right uncinate fasciculus
 
|style="background:rgb(106,174,155)"|rgb(106,174,155)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|81
 
|left uncinate fasciculus
 
|style="background:rgb(106,174,155)"|rgb(106,174,155)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|82
 
|right cingulum bundle
 
|style="background:rgb(154,146,83)"|rgb(154,146,83)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|83
 
|left cingulum bundle
 
|style="background:rgb(154,146,83)"|rgb(154,146,83)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|84
 
|projection fibers
 
|style="background:rgb(126,126,55)"|rgb(126,126,55)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|85
 
|right corticospinal tract
 
|style="background:rgb(201,160,133)"|rgb(201,160,133)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|86
 
|left corticospinal tract
 
|style="background:rgb(201,160,133)"|rgb(201,160,133)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|87
 
|right optic radiation
 
|style="background:rgb(78,152,141)"|rgb(78,152,141)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|88
 
|left optic radiation
 
|style="background:rgb(78,152,141)"|rgb(78,152,141)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|89
 
|right medial lemniscus
 
|style="background:rgb(174,140,103)"|rgb(174,140,103)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|90
 
|left medial lemniscus
 
|style="background:rgb(174,140,103)"|rgb(174,140,103)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|91
 
|right superior cerebellar peduncle
 
|style="background:rgb(139,126,177)"|rgb(139,126,177)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|92
 
|left superior cerebellar peduncle
 
|style="background:rgb(139,126,177)"|rgb(139,126,177)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|93
 
|right middle cerebellar peduncle
 
|style="background:rgb(148,120,72)"|rgb(148,120,72)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|94
 
|left middle cerebellar peduncle
 
|style="background:rgb(148,120,72)"|rgb(148,120,72)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|95
 
|right inferior cerebellar peduncle
 
|style="background:rgb(186,135,135)"|rgb(186,135,135)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|96
 
|left inferior cerebellar peduncle
 
|style="background:rgb(186,135,135)"|rgb(186,135,135)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|97
 
|optic chiasm
 
|style="background:rgb(99,106,24)"|rgb(99,106,24)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|98
 
|right optic tract
 
|style="background:rgb(156,171,108)"|rgb(156,171,108)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|99
 
|left optic tract
 
|style="background:rgb(156,171,108)"|rgb(156,171,108)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|100
 
|right fornix
 
|style="background:rgb(64,123,147)"|rgb(64,123,147)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|101
 
|left fornix
 
|style="background:rgb(64,123,147)"|rgb(64,123,147)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|102
 
|commissural fibers
 
|style="background:rgb(138,95,74)"|rgb(138,95,74)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|103
 
|corpus callosum
 
|style="background:rgb(97,113,158)"|rgb(97,113,158)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|104
 
|posterior commissure
 
|style="background:rgb(126,161,197)"|rgb(126,161,197)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|105
 
|cerebellar white matter
 
|style="background:rgb(194,195,164)"|rgb(194,195,164)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|106
 
|CSF space
 
|style="background:rgb(85,188,255)"|rgb(85,188,255)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|107
 
|ventricles of brain
 
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|108
 
|right lateral ventricle
 
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|109
 
|left lateral ventricle
 
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|110
 
|right third ventricle
 
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|111
 
|left third ventricle
 
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|112
 
|cerebral aqueduct
 
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|113
 
|fourth ventricle
 
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|114
 
|subarachnoid space
 
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|115
 
|spinal cord
 
|style="background:rgb(244,214,49)"|rgb(244,214,49)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|116
 
|gray matter of spinal cord
 
|style="background:rgb(200,200,215)"|rgb(200,200,215)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|117
 
|white matter of spinal cord
 
|style="background:rgb(250,250,225)"|rgb(250,250,225)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|118
 
|endocrine system of brain
 
|style="background:rgb(82,174,128)"|rgb(82,174,128)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|119
 
|pituitary gland
 
|style="background:rgb(57,157,110)"|rgb(57,157,110)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|120
 
|adenohypophysis
 
|style="background:rgb(60,143,83)"|rgb(60,143,83)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|121
 
|neurohypophysis
 
|style="background:rgb(92,162,109)"|rgb(92,162,109)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|122
 
|meninges
 
|style="background:rgb(255,244,209)"|rgb(255,244,209)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|123
 
|dura mater
 
|style="background:rgb(255,244,209)"|rgb(255,244,209)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|124
 
|arachnoid
 
|style="background:rgb(255,244,209)"|rgb(255,244,209)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|125
 
|pia mater
 
|style="background:rgb(255,244,209)"|rgb(255,244,209)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|126
 
|muscles of head
 
|style="background:rgb(201,121,77)"|rgb(201,121,77)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|127
 
|salivary glands
 
|style="background:rgb(70,163,117)"|rgb(70,163,117)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|128
 
|lips
 
|style="background:rgb(188,91,95)"|rgb(188,91,95)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|129
 
|nose
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|130
 
|tongue
 
|style="background:rgb(166,84,94)"|rgb(166,84,94)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|131
 
|soft palate
 
|style="background:rgb(182,105,107)"|rgb(182,105,107)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|132
 
|right inner ear
 
|style="background:rgb(229,147,118)"|rgb(229,147,118)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|133
 
|left inner ear
 
|style="background:rgb(229,147,118)"|rgb(229,147,118)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|134
 
|right external ear
 
|style="background:rgb(174,122,90)"|rgb(174,122,90)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|135
 
|left external ear
 
|style="background:rgb(174,122,90)"|rgb(174,122,90)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|136
 
|right middle ear
 
|style="background:rgb(201,112,73)"|rgb(201,112,73)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|137
 
|left middle ear
 
|style="background:rgb(201,112,73)"|rgb(201,112,73)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|138
 
|right eyeball
 
|style="background:rgb(194,142,0)"|rgb(194,142,0)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|139
 
|left eyeball
 
|style="background:rgb(194,142,0)"|rgb(194,142,0)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|140
 
|skull
 
|style="background:rgb(241,213,144)"|rgb(241,213,144)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|141
 
|right frontal bone
 
|style="background:rgb(203,179,77)"|rgb(203,179,77)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|142
 
|left frontal bone
 
|style="background:rgb(203,179,77)"|rgb(203,179,77)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|143
 
|right parietal bone
 
|style="background:rgb(229,204,109)"|rgb(229,204,109)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|144
 
|left parietal bone
 
|style="background:rgb(229,204,109)"|rgb(229,204,109)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|145
 
|right temporal bone
 
|style="background:rgb(255,243,152)"|rgb(255,243,152)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|146
 
|left temporal bone
 
|style="background:rgb(255,243,152)"|rgb(255,243,152)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|147
 
|right sphenoid bone
 
|style="background:rgb(209,185,85)"|rgb(209,185,85)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|148
 
|left sphenoid bone
 
|style="background:rgb(209,185,85)"|rgb(209,185,85)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|149
 
|right ethmoid bone
 
|style="background:rgb(248,223,131)"|rgb(248,223,131)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|150
 
|left ethmoid bone
 
|style="background:rgb(248,223,131)"|rgb(248,223,131)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|151
 
|occipital bone
 
|style="background:rgb(255,230,138)"|rgb(255,230,138)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|152
 
|maxilla
 
|style="background:rgb(196,172,68)"|rgb(196,172,68)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|153
 
|right zygomatic bone
 
|style="background:rgb(255,255,167)"|rgb(255,255,167)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|154
 
|right lacrimal bone
 
|style="background:rgb(255,250,160)"|rgb(255,250,160)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|155
 
|vomer bone
 
|style="background:rgb(255,237,145)"|rgb(255,237,145)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|156
 
|right palatine bone
 
|style="background:rgb(242,217,123)"|rgb(242,217,123)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|157
 
|left palatine bone
 
|style="background:rgb(242,217,123)"|rgb(242,217,123)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|158
 
|mandible
 
|style="background:rgb(222,198,101)"|rgb(222,198,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|159
 
|neck
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|160
 
|muscles of neck
 
|style="background:rgb(213,124,109)"|rgb(213,124,109)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|161
 
|pharynx
 
|style="background:rgb(184,105,108)"|rgb(184,105,108)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|162
 
|larynx
 
|style="background:rgb(150,208,243)"|rgb(150,208,243)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|163
 
|thyroid gland
 
|style="background:rgb(62,162,114)"|rgb(62,162,114)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|164
 
|right parathyroid glands
 
|style="background:rgb(62,162,114)"|rgb(62,162,114)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|165
 
|left parathyroid glands
 
|style="background:rgb(62,162,114)"|rgb(62,162,114)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|166
 
|skeleton of neck
 
|style="background:rgb(242,206,142)"|rgb(242,206,142)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|167
 
|hyoid bone
 
|style="background:rgb(250,210,139)"|rgb(250,210,139)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|168
 
|cervical vertebral column
 
|style="background:rgb(255,255,207)"|rgb(255,255,207)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|169
 
|thorax
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|170
 
|trachea
 
|style="background:rgb(182,228,255)"|rgb(182,228,255)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|171
 
|bronchi
 
|style="background:rgb(175,216,244)"|rgb(175,216,244)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|172
 
|right lung
 
|style="background:rgb(197,165,145)"|rgb(197,165,145)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|173
 
|left lung
 
|style="background:rgb(197,165,145)"|rgb(197,165,145)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|174
 
|superior lobe of right lung
 
|style="background:rgb(172,138,115)"|rgb(172,138,115)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|175
 
|superior lobe of left lung
 
|style="background:rgb(172,138,115)"|rgb(172,138,115)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|176
 
|middle lobe of right lung
 
|style="background:rgb(202,164,140)"|rgb(202,164,140)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|177
 
|inferior lobe of right lung
 
|style="background:rgb(224,186,162)"|rgb(224,186,162)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|178
 
|inferior lobe of left lung
 
|style="background:rgb(224,186,162)"|rgb(224,186,162)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|179
 
|pleura
 
|style="background:rgb(255,245,217)"|rgb(255,245,217)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|180
 
|heart
 
|style="background:rgb(206,110,84)"|rgb(206,110,84)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|181
 
|right atrium
 
|style="background:rgb(210,115,89)"|rgb(210,115,89)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|182
 
|left atrium
 
|style="background:rgb(203,108,81)"|rgb(203,108,81)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|183
 
|atrial septum
 
|style="background:rgb(233,138,112)"|rgb(233,138,112)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|184
 
|ventricular septum
 
|style="background:rgb(195,100,73)"|rgb(195,100,73)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|185
 
|right ventricle of heart
 
|style="background:rgb(181,85,57)"|rgb(181,85,57)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|186
 
|left ventricle of heart
 
|style="background:rgb(152,55,13)"|rgb(152,55,13)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|187
 
|mitral valve
 
|style="background:rgb(159,63,27)"|rgb(159,63,27)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|188
 
|tricuspid valve
 
|style="background:rgb(166,70,38)"|rgb(166,70,38)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|189
 
|aortic valve
 
|style="background:rgb(218,123,97)"|rgb(218,123,97)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|190
 
|pulmonary valve
 
|style="background:rgb(225,130,104)"|rgb(225,130,104)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|191
 
|aorta
 
|style="background:rgb(224,97,76)"|rgb(224,97,76)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|192
 
|pericardium
 
|style="background:rgb(255,244,209)"|rgb(255,244,209)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|193
 
|pericardial cavity
 
|style="background:rgb(184,122,154)"|rgb(184,122,154)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|194
 
|esophagus
 
|style="background:rgb(211,171,143)"|rgb(211,171,143)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|195
 
|thymus
 
|style="background:rgb(47,150,103)"|rgb(47,150,103)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|196
 
|mediastinum
 
|style="background:rgb(255,244,209)"|rgb(255,244,209)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|197
 
|skin of thoracic wall
 
|style="background:rgb(173,121,88)"|rgb(173,121,88)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|198
 
|muscles of thoracic wall
 
|style="background:rgb(188,95,76)"|rgb(188,95,76)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|199
 
|skeleton of thorax
 
|style="background:rgb(255,239,172)"|rgb(255,239,172)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|200
 
|thoracic vertebral column
 
|style="background:rgb(226,202,134)"|rgb(226,202,134)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|201
 
|ribs
 
|style="background:rgb(253,232,158)"|rgb(253,232,158)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|202
 
|sternum
 
|style="background:rgb(244,217,154)"|rgb(244,217,154)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|203
 
|right clavicle
 
|style="background:rgb(205,179,108)"|rgb(205,179,108)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|204
 
|left clavicle
 
|style="background:rgb(205,179,108)"|rgb(205,179,108)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|205
 
|abdominal cavity
 
|style="background:rgb(186,124,161)"|rgb(186,124,161)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|206
 
|abdomen
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|207
 
|peritoneum
 
|style="background:rgb(255,255,220)"|rgb(255,255,220)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|208
 
|omentum
 
|style="background:rgb(234,234,194)"|rgb(234,234,194)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|209
 
|peritoneal cavity
 
|style="background:rgb(204,142,178)"|rgb(204,142,178)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|210
 
|retroperitoneal space
 
|style="background:rgb(180,119,153)"|rgb(180,119,153)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|211
 
|stomach
 
|style="background:rgb(216,132,105)"|rgb(216,132,105)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|212
 
|duodenum
 
|style="background:rgb(255,253,229)"|rgb(255,253,229)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|213
 
|small bowel
 
|style="background:rgb(205,167,142)"|rgb(205,167,142)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|214
 
|colon
 
|style="background:rgb(204,168,143)"|rgb(204,168,143)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|215
 
|anus
 
|style="background:rgb(255,224,199)"|rgb(255,224,199)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|216
 
|liver
 
|style="background:rgb(221,130,101)"|rgb(221,130,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|217
 
|biliary tree
 
|style="background:rgb(0,145,30)"|rgb(0,145,30)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|218
 
|gallbladder
 
|style="background:rgb(139,150,98)"|rgb(139,150,98)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|219
 
|pancreas
 
|style="background:rgb(249,180,111)"|rgb(249,180,111)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|220
 
|spleen
 
|style="background:rgb(157,108,162)"|rgb(157,108,162)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|221
 
|urinary system
 
|style="background:rgb(203,136,116)"|rgb(203,136,116)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|222
 
|right kidney
 
|style="background:rgb(185,102,83)"|rgb(185,102,83)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|223
 
|left kidney
 
|style="background:rgb(185,102,83)"|rgb(185,102,83)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|224
 
|right ureter
 
|style="background:rgb(247,182,164)"|rgb(247,182,164)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|225
 
|left ureter
 
|style="background:rgb(247,182,164)"|rgb(247,182,164)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|226
 
|urinary bladder
 
|style="background:rgb(222,154,132)"|rgb(222,154,132)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|227
 
|urethra
 
|style="background:rgb(124,186,223)"|rgb(124,186,223)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|228
 
|right adrenal gland
 
|style="background:rgb(249,186,150)"|rgb(249,186,150)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|229
 
|left adrenal gland
 
|style="background:rgb(249,186,150)"|rgb(249,186,150)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|230
 
|female internal genitalia
 
|style="background:rgb(244,170,147)"|rgb(244,170,147)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|231
 
|uterus
 
|style="background:rgb(255,181,158)"|rgb(255,181,158)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|232
 
|right fallopian tube
 
|style="background:rgb(255,190,165)"|rgb(255,190,165)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|233
 
|left fallopian tube
 
|style="background:rgb(227,153,130)"|rgb(227,153,130)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|234
 
|right ovary
 
|style="background:rgb(213,141,113)"|rgb(213,141,113)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|235
 
|left ovary
 
|style="background:rgb(213,141,113)"|rgb(213,141,113)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|236
 
|vagina
 
|style="background:rgb(193,123,103)"|rgb(193,123,103)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|237
 
|male internal genitalia
 
|style="background:rgb(216,146,127)"|rgb(216,146,127)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|238
 
|prostate
 
|style="background:rgb(230,158,140)"|rgb(230,158,140)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|239
 
|right seminal vesicle
 
|style="background:rgb(245,172,147)"|rgb(245,172,147)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|240
 
|left seminal vesicle
 
|style="background:rgb(245,172,147)"|rgb(245,172,147)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|241
 
|right deferent duct
 
|style="background:rgb(241,172,151)"|rgb(241,172,151)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|242
 
|left deferent duct
 
|style="background:rgb(241,172,151)"|rgb(241,172,151)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|243
 
|skin of abdominal wall
 
|style="background:rgb(177,124,92)"|rgb(177,124,92)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|244
 
|muscles of abdominal wall
 
|style="background:rgb(171,85,68)"|rgb(171,85,68)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|245
 
|skeleton of abdomen
 
|style="background:rgb(217,198,131)"|rgb(217,198,131)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|246
 
|lumbar vertebral column
 
|style="background:rgb(212,188,102)"|rgb(212,188,102)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|247
 
|female external genitalia
 
|style="background:rgb(185,135,134)"|rgb(185,135,134)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|248
 
|male external genitalia
 
|style="background:rgb(185,135,134)"|rgb(185,135,134)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|249
 
|skeleton of upper limb
 
|style="background:rgb(198,175,125)"|rgb(198,175,125)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|250
 
|muscles of upper limb
 
|style="background:rgb(194,98,79)"|rgb(194,98,79)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|251
 
|right upper limb
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|252
 
|left upper limb
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|253
 
|right shoulder
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|254
 
|left shoulder
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|255
 
|right arm
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|256
 
|left arm
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|257
 
|right elbow
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|258
 
|left elbow
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|259
 
|right forearm
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|260
 
|left forearm
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|261
 
|right wrist
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|262
 
|left wrist
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|263
 
|right hand
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|264
 
|left hand
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|265
 
|skeleton of lower limb
 
|style="background:rgb(255,238,170)"|rgb(255,238,170)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|266
 
|muscles of lower limb
 
|style="background:rgb(206,111,93)"|rgb(206,111,93)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|267
 
|right lower limb
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|268
 
|left lower limb
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|269
 
|right hip
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|270
 
|left hip
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|271
 
|right thigh
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|272
 
|left thigh
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|273
 
|right knee
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|274
 
|left knee
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|275
 
|right leg
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|276
 
|left leg
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|277
 
|right foot
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|278
 
|left foot
 
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|279
 
|peripheral nervous system
 
|style="background:rgb(216,186,0)"|rgb(216,186,0)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|280
 
|autonomic nerve
 
|style="background:rgb(255,226,77)"|rgb(255,226,77)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|281
 
|sympathetic trunk
 
|style="background:rgb(255,243,106)"|rgb(255,243,106)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|282
 
|cranial nerves
 
|style="background:rgb(255,234,92)"|rgb(255,234,92)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|283
 
|vagus nerve
 
|style="background:rgb(240,210,35)"|rgb(240,210,35)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|284
 
|peripheral nerve
 
|style="background:rgb(224,194,0)"|rgb(224,194,0)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|285
 
|circulatory system
 
|style="background:rgb(213,99,79)"|rgb(213,99,79)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|286
 
|systemic arterial system
 
|style="background:rgb(217,102,81)"|rgb(217,102,81)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|287
 
|systemic venous system
 
|style="background:rgb(0,147,202)"|rgb(0,147,202)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|288
 
|pulmonary arterial system
 
|style="background:rgb(0,122,171)"|rgb(0,122,171)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|289
 
|pulmonary venous system
 
|style="background:rgb(186,77,64)"|rgb(186,77,64)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|290
 
|lymphatic system
 
|style="background:rgb(111,197,131)"|rgb(111,197,131)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|291
 
|needle
 
|style="background:rgb(240,255,30)"|rgb(240,255,30)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|292
 
|region 0
 
|style="background:rgb(185,232,61)"|rgb(185,232,61)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|293
 
|region 1
 
|style="background:rgb(0,226,255)"|rgb(0,226,255)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|294
 
|region 2
 
|style="background:rgb(251,159,255)"|rgb(251,159,255)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|295
 
|region 3
 
|style="background:rgb(230,169,29)"|rgb(230,169,29)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|296
 
|region 4
 
|style="background:rgb(0,194,113)"|rgb(0,194,113)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|297
 
|region 5
 
|style="background:rgb(104,160,249)"|rgb(104,160,249)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|298
 
|region 6
 
|style="background:rgb(221,108,158)"|rgb(221,108,158)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|299
 
|region 7
 
|style="background:rgb(137,142,0)"|rgb(137,142,0)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|300
 
|region 8
 
|style="background:rgb(230,70,0)"|rgb(230,70,0)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|301
 
|region 9
 
|style="background:rgb(0,147,0)"|rgb(0,147,0)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|302
 
|region 10
 
|style="background:rgb(0,147,248)"|rgb(0,147,248)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|303
 
|region 11
 
|style="background:rgb(231,0,206)"|rgb(231,0,206)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|304
 
|region 12
 
|style="background:rgb(129,78,0)"|rgb(129,78,0)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|305
 
|region 13
 
|style="background:rgb(0,116,0)"|rgb(0,116,0)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|306
 
|region 14
 
|style="background:rgb(0,0,255)"|rgb(0,0,255)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|307
 
|region 15
 
|style="background:rgb(157,0,0)"|rgb(157,0,0)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|308
 
|unknown
 
|style="background:rgb(100,100,130)"|rgb(100,100,130)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|309
 
|cyst
 
|style="background:rgb(205,205,100)"|rgb(205,205,100)
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|}
 
  
Inherit RGB colors from LUT (note that Segmentation objects allow to encode recommended display color in "Recommended Display CIELab Value" (0062,000D) attribute; these values are encoded in [http://en.wikipedia.org/wiki/Lab_color_space CIALab]).
+
Then you can use grep as follows:
 +
 
 +
<pre>
 +
% grep -i 'frontal lobe' sct1_Concepts_Core_INT_20110131.txt | grep -i structure | grep -i entire
 +
180920004 0 Entire frontal lobe (body structure) 7N000 T-A2218 1
 +
279169003 0 Entire frontal lobe gyrus (body structure) Xa10B T-A2207 1
 +
314141005 0 Entire right frontal lobe (body structure) XaEYz T-A2213 0
 +
314142003 0 Entire left frontal lobe (body structure) XaEZ0 T-A2214 0
 +
362330001 0 Entire cortex of frontal lobe (body structure) XU96w T-A2211 1
 +
362331002 0 Entire white matter of frontal lobe (body structure) XU96y T-A2221 1
 +
</pre>
 +
 
 +
You can find this sort of thing using the UMLS Terminology Browser (at https://uts.nlm.nih.gov/metathesaurus.html), for example, as follows:
 +
 
 +
[[Image:Umls_terminologybrowser_entirefrontallobe.png]]
 +
 
 +
=Mapping Slicer GeneralAnatomy LUT to SNOMED Standard Terminology=
 +
Original GeneralAnatomy LUT is available here: https://www.slicer.org/wiki/Documentation/4.1/SlicerApplication/LookupTables/GenericAnatomyColors. The table mapping was compiled by David Clunie, Andrey Fedorov and Neha Agrawal to include Segmented Property Category, Type and Modifier (when appropriate), which are required for encoding label segments in DICOM SEG. See [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.4/Extensions/Reporting Reporting module documentation] for the most up to date mapping.
 +
 
 +
Licensing and redistribution: per agreement between SNOMED and DICOM, "the agreement with SNOMED is to allow any implementer to use the terms included in DICOM in their implementations and products without fee". DICOM correction proposal CP-1528 (ftp://medical.nema.org/medical/dicom/cp/cp1258_01.pdf, Refactor segment description, extend segment types and anatomy) contains the items included in this table.

Latest revision as of 17:12, 10 July 2017

Home < Projects:QIN:3D Slicer Annotation Image Markup:Standard Terminology

This is a collection of relevant pieces from:

Segmentation image module attributes

Segmentation image module attributes must in particular include the following (PS 3.3-2011, p.989):

PS3.3-SegmentationAttributes.png

PS3.3-CodedEntryData.png

Code sequence attributes

PS3.3-CodeSequenceAttributes.png

General Anatomy Macro

The General Anatomy Macro is defined as follows (PS 3.3-2011, p.96):

PS3.3-GeneralAnatomyMacro.png

Coding Scheme Designators

PS3.3-CodingSchemeDesignators1.png

PS3.3-CodingSchemeDesignators2.png

NOTE: this table is incomplete, consult PS 3.16-2011 p.43.

RadLex

RadLex RID13419.png

SNOMED

David Clunie in email communication Sept 17, 2012:

[...] The [DICOM] agreement with SNOMED
is to allow any implementer to use the terms included in DICOM in their
implementations and products without fee; it is not just to be able to
include them in the text of the standard documents.

So, since Slicer would be using the concepts to include in a DICOM SEG
object, you do not need any additional agreement, nor any agreement with
SNOMED to distribute the source code (my PixelMed Java DICOM toolkit is
full of SNOMED codes, for example, and I neither have not need such an
additional agreement).

Notes on choosing SNOMED concepts when fleshing out the table, esp. regarding anatomy. Make sure that you choose "(body structure)" concepts for anatomy, and that you pick the "entire ..." concept rather than "structure of" etc., and if the choice is not obvious, include about your choice so that these can be flagged for special attention during review.

One way to find the right SNOMED code without using one of the terminology browsers is just to download the text files from the UMLS (from http://www.nlm.nih.gov/research/umls/licensedcontent/snomedctfiles.html). You will need to register and get a user name and password.

Then you can use grep as follows:

% grep -i 'frontal lobe' sct1_Concepts_Core_INT_20110131.txt | grep -i structure | grep -i entire
180920004	0	Entire frontal lobe (body structure)	7N000	T-A2218	1
279169003	0	Entire frontal lobe gyrus (body structure)	Xa10B	T-A2207	1
314141005	0	Entire right frontal lobe (body structure)	XaEYz	T-A2213	0
314142003	0	Entire left frontal lobe (body structure)	XaEZ0	T-A2214	0
362330001	0	Entire cortex of frontal lobe (body structure)	XU96w	T-A2211	1
362331002	0	Entire white matter of frontal lobe (body structure)	XU96y	T-A2221	1

You can find this sort of thing using the UMLS Terminology Browser (at https://uts.nlm.nih.gov/metathesaurus.html), for example, as follows:

Umls terminologybrowser entirefrontallobe.png

Mapping Slicer GeneralAnatomy LUT to SNOMED Standard Terminology

Original GeneralAnatomy LUT is available here: https://www.slicer.org/wiki/Documentation/4.1/SlicerApplication/LookupTables/GenericAnatomyColors. The table mapping was compiled by David Clunie, Andrey Fedorov and Neha Agrawal to include Segmented Property Category, Type and Modifier (when appropriate), which are required for encoding label segments in DICOM SEG. See Reporting module documentation for the most up to date mapping.

Licensing and redistribution: per agreement between SNOMED and DICOM, "the agreement with SNOMED is to allow any implementer to use the terms included in DICOM in their implementations and products without fee". DICOM correction proposal CP-1528 (ftp://medical.nema.org/medical/dicom/cp/cp1258_01.pdf, Refactor segment description, extend segment types and anatomy) contains the items included in this table.