Projects:QIN:3D Slicer Annotation Image Markup:Standard Terminology

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This is a collection of relevant pieces from:

Segmentation image module attributes

Segmentation image module attributes must in particular include the following (PS 3.3-2011, p.989):

PS3.3-SegmentationAttributes.png

PS3.3-CodedEntryData.png

Code sequence attributes

PS3.3-CodeSequenceAttributes.png

General Anatomy Macro

The General Anatomy Macro is defined as follows (PS 3.3-2011, p.96):

PS3.3-GeneralAnatomyMacro.png

Coding Scheme Designators

PS3.3-CodingSchemeDesignators1.png

PS3.3-CodingSchemeDesignators2.png

NOTE: this table is incomplete, consult PS 3.16-2011 p.43.

RadLex

RadLex RID13419.png

Proposed approach for Slicer LUT terminology mapping

  1. Start with the GeneralAnatomy LUT (see here: http://www.slicer.org/slicerWiki/index.php/Slicer3:2010_GenericAnatomyColors)
  2. Using RadLex browser, identify General Anatomy, Segmented Property Category and Segmented Property Type codes (using the hierarchy) for a subset of the GeneralAnatomy LUT entries
  3. Inherit RGB colors from LUT (note that Segmentation objects allow to encode recommended display color in "Recommended Display CIELab Value" (0062,000D) attribute; these values are encoded in CIALab).