Projects:RegistrationDocumentation:UseCaseInventory

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Source

Data is collected from a variety of sources. Because we want to focus on the registration problem and not be distracted by image format or other data management issues, the datasets listed here are copied and reformatted. As the data becomes available a download link is added.

  • Recommended is a direct linkt to a download page from the main 3Dslicer user page as complementary source to XNAT. The general XNAT GUI is too complex for a simple 1-case download. We expect most users to download only 1 or 2 files closest to their particular use case, not entire study sets. Such download should be acessible with 1-2 clicks, as with other slicer resources.
  • Disk usage: Likely these example sets will grow no larger than 10GB. Estimating 50-80MB per case would allow 60-100 cases within a 5GB space. S
  • Since we post reformatted and preprocessed data, where possible the link to the original source is provided.
  • Links here also from the NA-MIC resource page.To be updated when moving.

Formatting

We seek to have all datasets in a single-volume file format, most likely .nii or .nrrd
Once formatting, anonymization and description are complete, listing here will be replaced with a download link. Temporarily listed are links to source databases, where avail.

Case Inventory Brain

Case Inventory Non-Brain

Case Inventory Non-human

Self-validation Sets

These are datasets with artificial misalignment, i.e. the perfect alignment is known.

  • Dual Echo PD/T2 intra subject different contrast self validation
  • Isotropic Brain SPGR T1 with single axis rotation