RSNA2011 Planning

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Quantitative Imaging Reading Room

Tentative list of demonstrations for the RSNA 2011 Slicer booth. Needs further development and testing Note: RSNA demo machines will need nvidia graphics cards to get GPU Volume Rendering

Nb DEMO Datasets Notes Tools Slicer Modules
1 Data Loading and Visualization Slicer3Visualization Data Slicer3Visualization Tutorial Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking (?) Data, Volumes, Models, Scene Views
2 MRI-based topographic parcellation of human brain EM Segmenter Data registration, segmentation EMSegmenter Tasks EM Segmenter EMSegmenter
3 Volume Rendering #1 Head Head CT Scan (Osirix Manix Dataset) show cropping, transfer functions, GPU, slice composite view, Annotations Volume Rendering and Annotations Volume Rendering, Annotations, Scene Views
4 Volume Rendering #2 Abdomen Abdominal CT scan with AAA (Osirix Panoramix Dataset) show cropping, transfer functions, GPU, slice composite view, Annotations Volume Rendering and Annotations Volume Rendering, Annotations, Scene Views
5 Volume Rendering #3 Thorax Thoracic CT scan show cropping, transfer functions, GPU, slice composite view, Annotations Volume Rendering and Annotations Volume Rendering, Annotations, Scene Views
6 Traumatic Brain Injury Case Analysis TBI data (UCLA) TBI tutorial ABC Segmentation, Model Maker, Editor, Annotations Data, ABC Segmentation, Model Maker, Editor, Annotations, Scene Views
7 Radiotherapy Plastimatch Dose Warping Data (MGH) Plastimatch Tutorial Plastimatch, DVH extension (Csaba) Data, Plastimatch Extension: DICOM/DICOM-RT Import, DICOM/DICOM-RT Export, B-Spine Deformable Registration,XFORMWARP Warping with transform Transforms,
8 White matter exploration for neurosurgical planning White Matter Exploration dataset Neurosurgical planning Tutorial Diffusion ( Estimation, Tractography, Fiducial Seeding), Editor, Model Maker Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display
9 Longitudinal analysis of meningioma growth (tentative) Change Tracker Data are part of the tutorial Change Tracker Tutorial Change Tracker, Compare Views, Volume Rendering Change Tracker, Volume Rendering
10 Image-guided prostate interventions TBD Pre-op/Intra-op registration; Use Case Demo Prostate Data Prostate Data updated for Slicer4, in progress Linked Viewing Annotations, Fast Affine Registration, Fast Rigid Registration, Fast Non Rigid BSpline Registration ?
11 Brain, Abdomen, Knee Atlas Brain Atlas Knee Atlas Abdominal Atlas Work in progress - atlases are being updated Linked Viewing Data, Volumes, Models, Scene Views


List of Slicer Modules involved in RSNA tutorials & demos

  • Data
  • Welcome to Slicer
  • Volumes
  • Models
  • Scene Views
  • Annotations
  • Volume Rendering
  • Editor
  • Model Maker
  • Diffusion Tensor Estimation
  • Diffusion Tensor Scalar Measurements
  • Tractography Labelmap Seeding
  • Tractography Fiducial Seeding
  • Tractography Display
  • BRAINSTools
  • Change Tracker
  • Extensions:
    • ABC
    • Plastimatch
    • EMSegmenter
    • Skull Stripper

Slicer4 Punchlist

  • Status of
    • brainsfit
    • em segmenter: task simple brain segmentation works as of this morning. Uses only one core for most of the time: Must thread. There is a part that is already parallelized.
    • ctkDICOMwidget
    • skull stripper
    • changetracker
    • DWI to full brain tractography still does not work on mac
    • Data module does not refresh after drag and drop. [1]
    • Center 3D view does not work properly [2]
  • Documentation: We need all core modules reasonably well documented.
  • Download pages: We do not have a lot of time left.
  • Volume rendering: Need to review with Julien
  • Render performance [3]: This is a big issue
  • See the plan in July 2011

Additional Material

(under development)

People

  • Ron Kikinis (Sunday through Tuesday)
  • Sonia Pujol (Saturday through Thursday)
  • Samira Farough (Saturday-Friday)
  • Andriy Fedorov (Saturday-Friday)
  • Steve Pieper (Sunday through Wednesday?)
  • Randy Gollub (Sunday-Monday)
  • Valerie Humblet (Sunday-Tuesday)
  • Kitware (Stephen Aylward ? JC ? Julien ?)

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