Difference between revisions of "SDIWG:Meeting Minutes 20071116"

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[[SDIWG:Software_and_Data_Integration_Working_Group|Top page of SDIWG web site]]
 
[[SDIWG:Software_and_Data_Integration_Working_Group|Top page of SDIWG web site]]
  
===Notes===
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==Notes==
 
''Friday, November 16, 2007: 2:30 -- 3:30 PM EST''<br>
 
''Friday, November 16, 2007: 2:30 -- 3:30 PM EST''<br>
 
''Please contact Peter Lyster for information [mailto:lysterp@mail.nih.gov Peter Lyster]''<br>
 
''Please contact Peter Lyster for information [mailto:lysterp@mail.nih.gov Peter Lyster]''<br>
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<b>Save the date for the next SDWIG tcon/Connect, three months from now: Friday February 22, 2008</b>
 
<b>Save the date for the next SDWIG tcon/Connect, three months from now: Friday February 22, 2008</b>
  
=== TCon Agenda ===
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==TCon Agenda==
  
 
*Roll Call/Note-taker (Ivo Dinov) (5 min)
 
*Roll Call/Note-taker (Ivo Dinov) (5 min)
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<br>
 
<br>
  
<b>Appendix: Biositemaps white paper</b>
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==Appendix: Biositemaps white paper==
 
*'''[[SDIWG:_NCBC_Resource_Yellow_Pages_and_Software_Ontologies|Biositemaps Resourceome]]''' (Ivo Dinov, Daniel Rubin, Will Schroeder, Beth Kirschner, Karen Skinner, Zohara Cohen, Bill Bug, Peter Lyster)
 
*'''[[SDIWG:_NCBC_Resource_Yellow_Pages_and_Software_Ontologies|Biositemaps Resourceome]]''' (Ivo Dinov, Daniel Rubin, Will Schroeder, Beth Kirschner, Karen Skinner, Zohara Cohen, Bill Bug, Peter Lyster)
 
**The biositemaps [[Media:Biositemaps-white-paper-v2.2.doc | white paper]] presents description of prototype for distributed architecture to address (i) locating, (ii) querying, (iii) composing or combining, and (iv) mining software tools and information resources on the Internet.  Each site which intends to contribute to the inventory instantiates a file on its Internet site ‘biositemap.xml’ which conforms to a defined schema and is tagged by a resource ontology. The prototype schema may be found at http://www.ncbcs.org/biositemaps/biositemaps-v04.xsd A good reference for XML editors is at http://en.wikipedia.org/wiki/Xml_editor e.g., we are using XMLmind.  The prototype resource ontology may be found at http://bioontology.org/projects/ontologies/SoftwareOntology/
 
**The biositemaps [[Media:Biositemaps-white-paper-v2.2.doc | white paper]] presents description of prototype for distributed architecture to address (i) locating, (ii) querying, (iii) composing or combining, and (iv) mining software tools and information resources on the Internet.  Each site which intends to contribute to the inventory instantiates a file on its Internet site ‘biositemap.xml’ which conforms to a defined schema and is tagged by a resource ontology. The prototype schema may be found at http://www.ncbcs.org/biositemaps/biositemaps-v04.xsd A good reference for XML editors is at http://en.wikipedia.org/wiki/Xml_editor e.g., we are using XMLmind.  The prototype resource ontology may be found at http://bioontology.org/projects/ontologies/SoftwareOntology/
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**Status of the NCBC iTools, which is uses the biositemaps. http://www.loni.ucla.edu/iToolssvc/ncbc_iTools.html
 
**Status of the NCBC iTools, which is uses the biositemaps. http://www.loni.ucla.edu/iToolssvc/ncbc_iTools.html
  
=== Minutes ===
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==Minutes==
  
 
Note taker: (Ivo Dinov) [Suggested order of note takers for future meetings: Dinov (this one); Chueh; Sherman; Schroeder; Floratos; Rubin; Jags]
 
Note taker: (Ivo Dinov) [Suggested order of note takers for future meetings: Dinov (this one); Chueh; Sherman; Schroeder; Floratos; Rubin; Jags]
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*
 
*
  
=== Action Items ===
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==Action Items==
 
*  
 
*  
 
*
 
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Revision as of 19:31, 16 November 2007

Home < SDIWG:Meeting Minutes 20071116

Agenda: NCBC Joint Working Group Meeting

Top page of SDIWG web site

Notes

Friday, November 16, 2007: 2:30 -- 3:30 PM EST
Please contact Peter Lyster for information Peter Lyster
SDIWG Meetings Page
Save the date for the next SDWIG tcon/Connect, three months from now: Friday February 22, 2008

TCon Agenda

present)

  • Discuss AMIA/ISCB translational informatics summit in March, see Panel Draft
  • Discussion of Biositemaps white paper and of authorship (see more details in 'Appendix' below).
  • Next 2 meeting dates set
  • Questions/Information Sharing


Appendix: Biositemaps white paper

  • Biositemaps Resourceome (Ivo Dinov, Daniel Rubin, Will Schroeder, Beth Kirschner, Karen Skinner, Zohara Cohen, Bill Bug, Peter Lyster)
    • The biositemaps white paper presents description of prototype for distributed architecture to address (i) locating, (ii) querying, (iii) composing or combining, and (iv) mining software tools and information resources on the Internet. Each site which intends to contribute to the inventory instantiates a file on its Internet site ‘biositemap.xml’ which conforms to a defined schema and is tagged by a resource ontology. The prototype schema may be found at http://www.ncbcs.org/biositemaps/biositemaps-v04.xsd A good reference for XML editors is at http://en.wikipedia.org/wiki/Xml_editor e.g., we are using XMLmind. The prototype resource ontology may be found at http://bioontology.org/projects/ontologies/SoftwareOntology/
    • Further postings will be made at the NCBC portal at http://www.ncbcs.org/biositemaps/
    • TBD: Long-term plan for maintenance of schema and resource ontology (hosting, versioning, ownership,...). Converge on contents of schema and resource ontology with appropriate parties. This will amount to a v1.0 release (i.e., figure out where to stop now and leave extensions to a later date). Resolve issues of locating the biositemaps content (hard-wired, crawl,...)
    • Status of the NCBC iTools, which is uses the biositemaps. http://www.loni.ucla.edu/iToolssvc/ncbc_iTools.html

Minutes

Note taker: (Ivo Dinov) [Suggested order of note takers for future meetings: Dinov (this one); Chueh; Sherman; Schroeder; Floratos; Rubin; Jags]

Action Items