SDIWG:Meeting Minutes 20080516
Contents
NCBC Joint Working Group Meeting
Notes
Friday May 16, 2008: 2:30-3:30 PM EST
Please contact Peter Lyster for information Peter Lyster
SDIWG Meetings Page
Save the date for the 2008 NCBC AHM: Friday August 13-15, 2008
Tcon Agenda
- Roll Call/Note-taker (Joy Ku) (5 min)
- Minutes from most recent SDIWG tcon Feb. 22, 2008 (5 min)
- NCBC All Hands Meeting, August 13-15, 2008. Logistics, Planning & Brainstorming discussion (Peter, Karin, All)
- Status check on three working groups:
- State of Biositemaps and Biositemaps white paper v3.2 (Peter, Ivo, Daniel) and Biomedical Resource Ontology (BRO)
- Programmatic and translational-research interactions with other initiatives (CTSA, BIRN, and so on)
- Overview of plan for next 2 months (Peter)
- State of the Roadmap Initiative
- Other Progress reports
- Next 2 meeting date (2008 NCBC AHM) - we may need a prep-meeting in early August!
- Questions/Information Sharing
Minutes
- Note taker: [Suggested order of note takers for future meetings: Joy Ku (this one); Schroeder; Floratos; Rubin; Jags, Dinov, Murphy]
- Review of Feb 22, 2008 Minutes
- Attendees: Peter Lyster (NIH/NIGMS), Joy Ku (Simbios), Jeanette Schmidt (Simbios), Natasha Noy (NCBO), Mark Musen (NCBO), Csonger Nyulas (NCBO), Ivo Dinov (CCB), David States (NCIBI), Zac Kohane (i2b2), Brian Athey (NCIBI), Jim Cavalcoli (NCIBI), Beth Kirschner (NCIBI), Karin Remington (NIH/NIGMS), John Matochik (NIH/NIAAA), Yuan Liu (NIH/NINDS), Jennie Larkin (NIH/NHLBI), Aris Floratos (MAGNet), Will Schroeder (NA-MIC), German Cavelier (NIH/NIMH)
- TBD ...
Action Items
- TBD.
Appendix: Biositemaps white paper
The biositemaps Biositemaps white paper v3.2 presents description of prototype for distributed architecture to address
- locating,
- querying,
- composing or combining, and
- mining software tools and information resources on the Internet.
Each site which intends to contribute to the inventory instantiates a file on its Internet site ‘biositemap.xml’ which conforms to a defined schema and is tagged by a resource ontology. The prototype schema may be found at http://www.ncbcs.org/biositemaps/biositemaps-v04.xsd A good reference for XML editors is at http://en.wikipedia.org/wiki/Xml_editor e.g., we are using XMLmind. The prototype resource ontology may be found at http://bioontology.org/projects/ontologies/SoftwareOntology/.
- The Biomedical Resource Ontology (BRO) (see BRO Requirements document) is an extensible terminology for online electronic resources, intended to be an enabling technology for tools which improve query and access to online resources.
- Further postings will be made at the NCBC portal at http://www.ncbcs.org/biositemaps/
- Status of the NCBC iTools, which is uses the biositemaps. http://iTools.loni.ucla.edu
