Difference between revisions of "SDIWG:Meeting Minutes 20100219"

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*Status check on '''working groups''':  
 
*Status check on '''working groups''':  
 
**[http://www.biositemaps.org Biositemaps] is a technology to address (i) locating, (ii) querying, (iii) composing or combining, and (iv) mining biomedical resources. The underlying technology for Biositemaps is the [http://bioportal.bioontology.org/visualize/40656 Biomedical Resource Ontology (BRO) V2.7.1] and the [http://biositemaps.bioontology.org/editor/ Information Model (IM) which is encapsulated in the Biositemaps Editor. Please try it out.]
 
**[http://www.biositemaps.org Biositemaps] is a technology to address (i) locating, (ii) querying, (iii) composing or combining, and (iv) mining biomedical resources. The underlying technology for Biositemaps is the [http://bioportal.bioontology.org/visualize/40656 Biomedical Resource Ontology (BRO) V2.7.1] and the [http://biositemaps.bioontology.org/editor/ Information Model (IM) which is encapsulated in the Biositemaps Editor. Please try it out.]
*** ([http://www.loni.ucla.edu/~dinov Ivo Dinov]) [http://www.na-mic.org/Wiki/images/9/96/CCB_Supplement_Biositemaps_Pipeline_Report_2010.pdf Biositemaps.RDF Extension facilitating resource execution, invocation, input/output and process control, and interoperability].
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*** ([http://www.loni.ucla.edu/~dinov Ivo Dinov]) [https://na-mic.org/w/images/9/96/CCB_Supplement_Biositemaps_Pipeline_Report_2010.pdf Biositemaps.RDF Extension facilitating resource execution, invocation, input/output and process control, and interoperability].
 
**** Example: CCB Biositemap.RDF
 
**** Example: CCB Biositemap.RDF
 
***** [http://www.loni.ucla.edu/download/iTools/biositemap_NCBC_CCB.rdf Original (Standard RDF)]
 
***** [http://www.loni.ucla.edu/download/iTools/biositemap_NCBC_CCB.rdf Original (Standard RDF)]
***** [http://www.na-mic.org/Wiki/images/e/e8/Biositemap_NCBC_CCB_PL_update021610.rdf Extended Biositemap_NCBC_CCB_PL_update021610.rdf]
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***** [https://na-mic.org/w/images/e/e8/Biositemap_NCBC_CCB_PL_update021610.rdf Extended Biositemap_NCBC_CCB_PL_update021610.rdf]
***** [http://www.na-mic.org/Wiki/images/1/16/Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf Extended Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf] (scalable by-reference version).
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***** [https://na-mic.org/w/images/1/16/Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf Extended Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf] (scalable by-reference version).
**** Example Pipeline workflows ([http://www.na-mic.org/Wiki/images/3/3b/ND_WaveletTransform_WAIR.pipe.txt ND_WaveletTransform_WAIR.pipe], [http://www.na-mic.org/Wiki/images/1/12/ShapeTransform.pipe.txt ShapeTransform.pipe], [http://www.na-mic.org/Wiki/images/d/db/ShapeDistance.pipe.txt ShapeDistance.pipe]).
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**** Example Pipeline workflows ([https://na-mic.org/w/images/3/3b/ND_WaveletTransform_WAIR.pipe.txt ND_WaveletTransform_WAIR.pipe], [https://na-mic.org/w/images/1/12/ShapeTransform.pipe.txt ShapeTransform.pipe], [https://na-mic.org/w/images/d/db/ShapeDistance.pipe.txt ShapeDistance.pipe]).
 
**** [http://pipeline.loni.ucla.edu/support/xml-overview/ Pipeline XML Invocation Protocol].
 
**** [http://pipeline.loni.ucla.edu/support/xml-overview/ Pipeline XML Invocation Protocol].
 
**** [http://www.loni.ucla.edu/twiki/bin/view/CCB/ITools_BiositemapsPipelineWorkflows See also this page].
 
**** [http://www.loni.ucla.edu/twiki/bin/view/CCB/ITools_BiositemapsPipelineWorkflows See also this page].

Latest revision as of 18:27, 10 July 2017

Home < SDIWG:Meeting Minutes 20100219

NCBC Joint Working Group Meeting

Top page of SDIWG web site

Notes

Friday February 19, 2010: 2:30-3:30 PM EST
Please contact Peter Lyster for information Peter Lyster
SDIWG Meetings Page
Save the date for the next SDWIG tcon/Connect, three months from now: May 21, 2010

Tcon DRAFT Agenda


Minutes

  • Note taker: [Suggested order of note takers for future meetings: Jags (this one), Dinov (next one), Murphy, Ku, Schroeder, Floratos, Rubenson]
  • Review of November 20, 2009 Minutes
  • Attendees:

Mark Musen Peter Good Peter Lyster Ivo Dinov Aaron Bookvich Anne Menkens Aris Floratos Csongor David Rubenson Jeanette Jeassie Tenenbaum Joy Ku K P Unnikrishnan Karen Skinner Kevin Smith Krishna (NIH) Nanwei Cao Sonia Pujol Steve Pieper Zhong Li Zohara Cohen

Briefly: Ivo Dinov presented LONI from UCLA. He illustrated the LONI pipeline, including the graphical interface. He showed how tools can be integrated via LONI using simple extensions of biositemaps. This was followed by a brief presentation and discussion on NCBC Dissemination and shared calendar.

Action Items

  • TBD