Seedings results comparison

From NAMIC Wiki
Revision as of 17:44, 21 June 2010 by Antonin07130 (talk | contribs)
Jump to: navigation, search
Home < Seedings results comparison

Key Investigators

  • Harvard Medical School: Antonin Perrot-Audet, Kishore Mosaliganti, Sean Megason
  • RPI: Badri Roysam, Raghav Padmanabhan

Project

Seed.png

Objective

  • Improve segmentation algorithms initialization for nuclei detection in 3D fluorescent microscopy:
    • get a better accuracy,
    • improve computation speed.

Approach, Plan

  • Compare different algorithms,
  • Find a measure to evaluate different algorithm results,
  • Fusion output of several algorithms.

Progress

  • Implemented 3 different algorithms with ITK:
    • Radial voting,
    • Hough transform,
    • Multi-scale Distance Map weighted Laplacian of Gaussian.

Ressources

  • Source code :
git@github.com:antonin07130/NAMICSeeding.git

We shall use git for version control : A small introduction to git : here

  • Data set :
Non public