Difference between revisions of "SidongLiu Update"
From NAMIC Wiki
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** A control panel style mosaic to flexibly display different teams or patients. A summary table showing the statistics. | ** A control panel style mosaic to flexibly display different teams or patients. A summary table showing the statistics. | ||
| − | * April 14- | + | * April 14-18 |
** Try Brain Visa trick on mac http://brainvisa.info/forum/viewtopic.php?f=2&t=1713#p6399 | ** Try Brain Visa trick on mac http://brainvisa.info/forum/viewtopic.php?f=2&t=1713#p6399 | ||
** Explore Nipype to see whether we can convert Gifti to VTK or STL, or other compatible format with Slicer http://www.mit.edu/~satra/nipype-nightly/users/examples/dmri_connectivity.html | ** Explore Nipype to see whether we can convert Gifti to VTK or STL, or other compatible format with Slicer http://www.mit.edu/~satra/nipype-nightly/users/examples/dmri_connectivity.html | ||
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*** Link the scene views to individual 3D mosaic viewers | *** Link the scene views to individual 3D mosaic viewers | ||
*** Test one MRI volume in 4 viewers first; then test 4 MRI volumes in 4 viewers; finally test the DTI data | *** Test one MRI volume in 4 viewers first; then test 4 MRI volumes in 4 viewers; finally test the DTI data | ||
| + | |||
| + | * April 21-23 | ||
| + | ** Made progress to the Mosaic Viewer module. Now it could display and manipulate multiple independent 3D viewers at the same time. | ||
| + | ** Discussed DTI Challenge preparation. Need to install Evernote and Live Minutes to enhance collaboration. | ||
| + | ** Next step would be to finalize the Mosaic Viewer by creating a scene view for the it. | ||
Revision as of 22:31, 23 April 2014
Home < SidongLiu Update- Feb 28
- MICCAI paper submissions
- Mar 12 - 14
- Start to work at SPL, 75 Fransic St
- Mar 17 - 21
- EMBC paper submission
- Implement a new functionality for peritumoral tract exploration
- Mar 24 - 28
- MICCAI paper reviews
- SNMMI abstract papers accepted
- Reformat the Hausdorff outputs
- Mar 31 - Apr 4
- Postdoctoral fellowship application
- Start to work at SPL, Boylston St
- April 7-11
- CMIG journal revised version submission
- ACM MM abstract preparation
- Work on DTI Editor module ("tract extractor")
- April 11
- The fiber selection function can be found in Diffusion -> Tractography -> FiberBundleLabelSelect module.
- The fiber bundle cropping function can be found in Tractography Display module. http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/TractographyDisplay
- Sidong's next task would be learn qt.QImage object and see how to manipulate it in Python. Check Steve's code at https://github.com/pieper/CompareVolumes/blob/master/CompareVolumes.py
- A control panel style mosaic to flexibly display different teams or patients. A summary table showing the statistics.
- April 14-18
- Try Brain Visa trick on mac http://brainvisa.info/forum/viewtopic.php?f=2&t=1713#p6399
- Explore Nipype to see whether we can convert Gifti to VTK or STL, or other compatible format with Slicer http://www.mit.edu/~satra/nipype-nightly/users/examples/dmri_connectivity.html
- Discussed the response letter for MICCAI submissions
- Next task would be
- Load the test data and create the scene views manually
- Link the scene views to individual 3D mosaic viewers
- Test one MRI volume in 4 viewers first; then test 4 MRI volumes in 4 viewers; finally test the DTI data
- April 21-23
- Made progress to the Mosaic Viewer module. Now it could display and manipulate multiple independent 3D viewers at the same time.
- Discussed DTI Challenge preparation. Need to install Evernote and Live Minutes to enhance collaboration.
- Next step would be to finalize the Mosaic Viewer by creating a scene view for the it.
