Difference between revisions of "Slicer3:Diffusion Editor"

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== Goals / What it can (in a while)==
 
== Goals / What it can (in a while)==
  
# Load a DWI dataset. If you load any other type of dataset the DWI Gradient Editor will be disabled.
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# '''Load a DWI dataset'''. If you load any other type of dataset the DWI Gradient Editor will be disabled.
# Choose the Measurement Frame.
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#''' Choose the Measurement Frame'''.
## Negative: Select the columns you want to negative.
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## '''Negative''': Select the columns you want to negative.
## Swap: Select two columns you want to swap.
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## '''Swap''': Select two columns you want to swap.
## Rotate: Select one column you want to rotate by an angle you can  
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## '''Rotate''': Select one column you want to rotate by an angle you can  
 
### choose from a given set of values.
 
### choose from a given set of values.
 
### set yourself.
 
### set yourself.
# Define the Gradients.
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# '''Define Gradients'''.
 
## If the DICOM header has the information about the gradients, the editor will put them in the text field.
 
## If the DICOM header has the information about the gradients, the editor will put them in the text field.
 
## If there is no information about the gradients, the GE gradients will be displayed by default.  
 
## If there is no information about the gradients, the GE gradients will be displayed by default.  
 
## You can copy/paste your own gradients in the text field.
 
## You can copy/paste your own gradients in the text field.
 
#Run the test. To see if the chosen parameters are reasonable, you can run a test that computes the Tractography Seeding.  
 
#Run the test. To see if the chosen parameters are reasonable, you can run a test that computes the Tractography Seeding.  
#Save the parameters as a NHRD File.
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#'''Save''' the parameters as a NHRD File.
#Load an existing NHRD File and run the test.
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#'''Load''' an existing NHRD File and run the test.
  
 
== How to use the editor ==
 
== How to use the editor ==

Revision as of 21:06, 5 December 2007

Home < Slicer3:Diffusion Editor

Interface

This screen shots show how the Interface will look like.

Goals / What it can (in a while)

  1. Load a DWI dataset. If you load any other type of dataset the DWI Gradient Editor will be disabled.
  2. Choose the Measurement Frame.
    1. Negative: Select the columns you want to negative.
    2. Swap: Select two columns you want to swap.
    3. Rotate: Select one column you want to rotate by an angle you can
      1. choose from a given set of values.
      2. set yourself.
  3. Define Gradients.
    1. If the DICOM header has the information about the gradients, the editor will put them in the text field.
    2. If there is no information about the gradients, the GE gradients will be displayed by default.
    3. You can copy/paste your own gradients in the text field.
  4. Run the test. To see if the chosen parameters are reasonable, you can run a test that computes the Tractography Seeding.
  5. Save the parameters as a NHRD File.
  6. Load an existing NHRD File and run the test.

How to use the editor