Difference between revisions of "Slicer3:LDDMM"
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(New page: == Goal == Make use of the remote nonlinear registration server provided by CIS at JHU. The functionality makes use of the back end server developed as part of the [http://www.mristudio...) |
(→Steps) |
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* Register your email address with [http://www.mristudio.org | MRIStudio]. | * Register your email address with [http://www.mristudio.org | MRIStudio]. | ||
| − | * Create an LDDMM configuration file | + | * Create an LDDMM configuration file (lddmm.conf) |
| + | |||
<pre> | <pre> | ||
IN_D=3 | IN_D=3 | ||
| Line 28: | Line 29: | ||
CH_EPSILON=25 | CH_EPSILON=25 | ||
</pre> | </pre> | ||
| + | |||
| + | * Create a zip file with the following contents: | ||
<pre> | <pre> | ||
| Line 43: | Line 46: | ||
-------- ------- | -------- ------- | ||
14443142 7 files | 14443142 7 files | ||
| + | </pre> | ||
| + | |||
| + | ** Images must be in Analyze format with the given names | ||
| + | ** identity.txt contains the email address registered at the MRIStudio.org site | ||
| + | ** LocalAddress.txt can be a placeholder like the following: | ||
| + | <pre> | ||
| + | Template | ||
| + | DUMMY | ||
| + | Target | ||
| + | DUMMY | ||
</pre> | </pre> | ||
Revision as of 17:57, 15 October 2007
Home < Slicer3:LDDMMGoal
Make use of the remote nonlinear registration server provided by CIS at JHU. The functionality makes use of the back end server developed as part of the | MRIStudio software.
Steps
- Register your email address with | MRIStudio.
- Create an LDDMM configuration file (lddmm.conf)
IN_D=3 SIMSTEPS=1000 IN_TIMESTEPS=10 DELTA=0.1 EPSILON=0.0000000001 IN_PROCS_Z=1 IN_PROCS_Y=1 IN_PROCS_X=1 ALPHA=0.005 GAMMA=1 POWERL=1 PADI=20 PADH=5 NORM_GRAD=1000 RESTART=0 SIGMA=1 ERROR=0.02 CH_EPSILON=25
- Create a zip file with the following contents:
$ unzip -l 4b16cc20106d2ca5b1da76d08aa41efc.zip
Archive: 4b16cc20106d2ca5b1da76d08aa41efc.zip
Length Date Time Name
-------- ---- ---- ----
7221032 09-04-07 16:37 Template.img
348 09-04-07 16:37 Template.hdr
7221032 09-04-07 16:37 Target.img
348 09-04-07 16:37 Target.hdr
16 09-04-07 16:37 identity.txt
139 09-04-07 16:37 LocalAddress.txt
227 09-04-07 16:37 lddmm.conf
-------- -------
14443142 7 files
- Images must be in Analyze format with the given names
- identity.txt contains the email address registered at the MRIStudio.org site
- LocalAddress.txt can be a placeholder like the following:
Template DUMMY Target DUMMY
