Difference between revisions of "Slicer4 Diffusion tutorial"

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Feb.14 Diffusion meeting - Sonia's reports on the DTI modules of the current Slicer4 release:
 
Feb.14 Diffusion meeting - Sonia's reports on the DTI modules of the current Slicer4 release:
  
* '''Suggested dead-line March 12, 2012''' ( preparation for the Iowa Workshop March 20-21)
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* Mantis Bug Reports:
 +
** [http://www.na-mic.org/Bug/view.php?id=1722 Brain Mask] (assigned to Demian, checked it out. It seems that it is a limitation of the Otsu strategy in this case due to the lack of padding, probably we need a real brain extraction tool)
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** [http://www.na-mic.org/Bug/view.php?id=1679 Color by Orientation] (assigned to Demian, fixed)
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** [http://www.na-mic.org/Bug/view.php?id=1678 Glyphs Visualization] (assigned to Alex, fixed)
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**[http://www.na-mic.org/Bug/view.php?id=1685 Fiducials Seeding ] (assigned to Alex, fixed)
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** [http://www.na-mic.org/Bug/view.php?id=1684 Consistency of the GUI in the labelmap and fiducial seeding modules] (assigned to Alex, fixed)
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** [http://www.na-mic.org/Bug/view.php?id=1724 Scalar Measurement computation issue (Planar measure)] : wrong window and level values in the Volumes module (assigned to Demian, fixed)
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** [http://www.na-mic.org/Bug/view.php?id=1725 Scalar measurement update issue]] (fixed by Julien Finet)
  
** [http://www.na-mic.org/Bug/view.php?id=1722 Brain Mask] (assigned to Demian)
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* Suggested Reorganization of the Diffusion menu (assigned to Demian, Done)
** [http://www.na-mic.org/Bug/view.php?id=1679 Color by Orientation] (assigned to Demian)
 
** [http://www.na-mic.org/Bug/view.php?id=1678 Glyphs Visualization] (assigned to Alex)
 
**[http://www.na-mic.org/Bug/view.php?id=1685 Fiducials Seeding ] (assigned to Alex)
 
** [http://www.na-mic.org/Bug/view.php?id=1684 Consistency of the GUI in the labelmap and fiducial seeding modules] (assigned to Alex)
 
 
 
* Suggested Reorganization of the Diffusion menu (assigned to Demian)
 
 
**Diffusion Data Conversion:  
 
**Diffusion Data Conversion:  
 
***DICOM to Nrrd
 
***DICOM to Nrrd
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*** Resample
 
*** Resample
  
* DicomToNrrdConverter should be DICOM To NRRD Converter, and make the parameters of the Output sections visible on the GUI (assigned to Demian)
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* DicomToNrrdConverter should be DICOM To NRRD Converter, and make the parameters of the Output sections visible on the GUI (assigned to Demian, done)
* Scalar Measurement computation issue (Planar measure): wrong window and level values in the Volumes module ( assigned to Julien Finet)  Is due to extreme values in the data - can this be clamped in the scalar estimation module?
 
 
* Slicer crashes when saving the DTI tutorial Scene on Mac (assigned to Steve)
 
* Slicer crashes when saving the DTI tutorial Scene on Mac (assigned to Steve)
  
 
* Tutorial dataset: [[media:DiffusionMRI_tutorialData.zip‎| Slicer4 DTI dataset]]
 
* Tutorial dataset: [[media:DiffusionMRI_tutorialData.zip‎| Slicer4 DTI dataset]]
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* '''Suggested dead-line March 12, 2012''' ( preparation for the Iowa Workshop March 20-21)

Latest revision as of 16:26, 12 March 2012

Home < Slicer4 Diffusion tutorial

Feb.14 Diffusion meeting - Sonia's reports on the DTI modules of the current Slicer4 release:

  • Suggested Reorganization of the Diffusion menu (assigned to Demian, Done)
    • Diffusion Data Conversion:
      • DICOM to Nrrd
      • DTIimport/export
    • DWI:
      • Brain Mask
      • Tensor Estimation
      • Denoising
    • DTI
      • Scalar Measurements
      • Tractography
      • Resample
  • DicomToNrrdConverter should be DICOM To NRRD Converter, and make the parameters of the Output sections visible on the GUI (assigned to Demian, done)
  • Slicer crashes when saving the DTI tutorial Scene on Mac (assigned to Steve)
  • Tutorial dataset: Slicer4 DTI dataset
  • Suggested dead-line March 12, 2012 ( preparation for the Iowa Workshop March 20-21)