Difference between revisions of "Slicer:Slicer 2.6 Building Leopard"

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When you run ./slicer2/Scripts/genlib.tcl, you will get errors when trying to build incrTcl.
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Running genlib.tcl again, the build should continue until partially through the ITK build, and then you will see this error:
 
 
 
Building CXX object Utilities/vxl/core/vnl/CMakeFiles/itkvnl.dir/vnl_math.o
 
/Users/hayes/slicer2/Lib/darwin-x86/Insight/Utilities/vxl/core/vnl/vnl_math.cxx: In function 'bool vnl_math_isinf(float)':
 
/Users/hayes/slicer2/Lib/darwin-x86/Insight/Utilities/vxl/core/vnl/vnl_math.cxx:221: error: '__isnand' was not declared in this scope
 
/Users/hayes/slicer2/Lib/darwin-x86/Insight/Utilities/vxl/core/vnl/vnl_math.cxx: In function 'bool vnl_math_isinf(double)':
 
/Users/hayes/slicer2/Lib/darwin-x86/Insight/Utilities/vxl/core/vnl/vnl_math.cxx:223: error: '__isnand' was not declared in this scope
 
/Users/hayes/slicer2/Lib/darwin-x86/Insight/Utilities/vxl/core/vnl/vnl_math.cxx: In function 'bool vnl_math_isinf(long double)':
 
/Users/hayes/slicer2/Lib/darwin-x86/Insight/Utilities/vxl/core/vnl/vnl_math.cxx:225: error: '__isnand' was not declared in this scope
 
make[2]: *** [Utilities/vxl/core/vnl/CMakeFiles/itkvnl.dir/vnl_math.o] Error 1
 
make[1]: *** [Utilities/vxl/core/vnl/CMakeFiles/itkvnl.dir/all] Error 2
 
make: *** [all] Error 2
 
 
 
This is due to a bug in ITK 2.6.  You can either upgrade to a newer version of ITK, or open up the file:
 
 
 
slicer2/Lib/darwin-x86/Insight/Utilities/vxl/core/vnl/vnl_math.cxx
 
 
 
in a text editor, and remove line 66:
 
 
 
# define isnan(x) __isnand((double)x)                                                                                                                 
 
 
 
and replace it with the following:
 
                                                                                                             
 
#define isnan(x) std::isnan(x)
 
 
 
Save the file and run genlib.tcl again.
 
 
 
Next, you'll get the following error:
 
 
 
Building C object SlicerIO/CMakeFiles/slicerio.dir/slicerio.o
 
/Users/hayes/slicer2/Lib/darwin-x86/NAMICSandBox/SlicerIO/slicerio.c: In function 'slicerFopen':
 
/Users/hayes/slicer2/Lib/darwin-x86/NAMICSandBox/SlicerIO/slicerio.c:95: error: '__sF' undeclared (first use in this function)
 
/Users/hayes/slicer2/Lib/darwin-x86/NAMICSandBox/SlicerIO/slicerio.c:95: error: (Each undeclared identifier is reported only once
 
/Users/hayes/slicer2/Lib/darwin-x86/NAMICSandBox/SlicerIO/slicerio.c:95: error: for each function it appears in.)
 
/Users/hayes/slicer2/Lib/darwin-x86/NAMICSandBox/SlicerIO/slicerio.c: In function 'slicerFclose':
 
/Users/hayes/slicer2/Lib/darwin-x86/NAMICSandBox/SlicerIO/slicerio.c:211: error: '__sF' undeclared (first use in this function)
 
/Users/hayes/slicer2/Lib/darwin-x86/NAMICSandBox/SlicerIO/slicerio.c: In function 'slicerFread':
 
  /Users/hayes/slicer2/Lib/darwin-x86/NAMICSandBox/SlicerIO/slicerio.c:258: error: '__sF' undeclared (first use in this function)
 
...etc.
 
 
 
You can just ignore this error.  It will disable SlicerIO, but shouldn't affect other portions of Slicer.
 

Revision as of 16:58, 21 May 2008

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