Difference between revisions of "SlicerCMFWorkshop Italy2015"

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==Workshop Title Here ==
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==Cranio Maxillo Facial imaging workshop using SlicerCMF ==
  
  
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==Date and Location==
 
==Date and Location==
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Tuesday November 23rd , time, at the University -- Italy.
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November 26th to november 28th , from 9:00AM to 8:00PM, at the "Università degli Studi dell'Insubria - Varese Como" -- Italy.
  
 
==Workshop  Content==
 
==Workshop  Content==
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==Presenters==
 
==Presenters==
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*      '''Antonio Ruellas''' , ''Ph.D, DDS, University of Rio de Janeiro''
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antonioruellas@yahoo.com.br
 
* '''Lucia Cevidanes''' , ''Ph.D, DDS, University of Michigan''
 
* '''Lucia Cevidanes''' , ''Ph.D, DDS, University of Michigan''
 
luciacev@umich.edu
 
luciacev@umich.edu
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==Data==
 
==Data==
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[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEV0M4eWJEeUhrb3c&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 1: Dicom files - They are different from the gipl files]
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[https://drive.google.com/open?id=0B5QjlDZ88CXrR2JCQ3hyWnc4V0U Folder 1: To convert DICOM to GPIL]
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 +
[https://drive.google.com/open?id=0B5QjlDZ88CXrRkcyTFlNQUN6QkE Folder 2: To do the segmentation]
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 +
[https://drive.google.com/open?id=0B5QjlDZ88CXrRkcyTFlNQUN6QkE Folder 3: To make models]
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[https://drive.google.com/open?id=0B5QjlDZ88CXraWd6dktOZ2I2VlE Folder 4: For head orientation]
  
−
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEQWJzN29BMnR2WW8&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 2: gipl files]
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[https://drive.google.com/open?id=0B5QjlDZ88CXrWFNjNF9tVGlnSGc Folder 5: To apply head orientation matrix to scan]
  
−
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEYWE4QWRXUk5JNjg&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 3: Scan already approximated]
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[https://drive.google.com/open?id=0B5QjlDZ88CXrTU5vbFBPck9aaTA Folder 6: To approximate manually]
  
−
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEOEVFWmVRUVpRQWM&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 4: CB segmentation]
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[https://drive.google.com/open?id=0B5QjlDZ88CXrZ1ltRzJWMlJFa3M Folder 7: To do voxel based registration]
  
−
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPESi1pQzVkQWFFckk&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 5: CB registration]
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[https://drive.google.com/open?id=0B5QjlDZ88CXrX3BDM0tPbEZFOFk Folder 8: To compute colormaps]
  
−
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPESUNRVERaY0JnXzQ&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 5a: segm Max and MD T1]
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[https://drive.google.com/open?id=0B5QjlDZ88CXrdHJ5MTJfc29EN1U Folder 9: Quantification]
  
−
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEWEp3ZWhkYTU4MVk&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 6: Models - CB registration]
+
[https://drive.google.com/open?id=0B5QjlDZ88CXrTzlZWnluU1NTak0 Folder 10: Extra materials]
  
 
[https://www.youtube.com/channel/UCQUtGe5KrpBt2k4mrNeHeUQ/videos DCBIA Videos - Tutorial videos for the image analysis tools]
 
[https://www.youtube.com/channel/UCQUtGe5KrpBt2k4mrNeHeUQ/videos DCBIA Videos - Tutorial videos for the image analysis tools]
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[http://www.ncbi.nlm.nih.gov/pubmed?term=spharm%20pdm%20styner SPHARM-PDM publications in PubMed]
 
[http://www.ncbi.nlm.nih.gov/pubmed?term=spharm%20pdm%20styner SPHARM-PDM publications in PubMed]
  
−
[http://www.slicer.org/slicerWiki/index.php/Main_Page Slicer user orientation]
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[https://www.slicer.org/wiki/Main_Page Slicer user orientation]
  
−
[http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Training Slicer tutorials]
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[https://www.slicer.org/wiki/Documentation/4.3/Training Slicer tutorials]
  
 
==Participant List==
 
==Participant List==
 +
'''Andrea Pistochini''',
 +
'''Elia Kodjo Chardey''',
 +
'''Alessendro Bruni''',
 +
'''Michele Vito Digregorio''',
 +
'''Alessendra Campobassa''',
 +
'''Federica Lorvetta''',
 +
'''Matteo Baretta''',
 +
'''Enrica Di Lorenzo''',
 +
'''Viviana Conti''',
 +
'''Giuseppa Sara Salone''',
 +
'''Chiara Bergamini''',
 +
'''Silvia Lupidi''',
 +
'''Paola Lorusso''',
 +
'''Alessandra Pisano''',
 +
'''Manti Giusepe''',
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''' Francesca Finazzi''',
 +
'''Meneghel Matteo''',
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'''Nicolo Vercellini''',
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'''Piero Antonio Zecca''',
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'''Giorgino Vincenzo''',
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'''Paolo Scovazzi''',
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'''Nicolo Defraia''',
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'''Francesca Farisco''',
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'''Giorgio Andrea Dolcini''',
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'''Azzi Lorenco''',
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'''Domenico Benagiano''',
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'''Maurizio Musoas''',
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'''Luigi Rubino''',
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'''Dino Pregnolato''',
 +
'''Claudia Firmani''',
 +
'''Gaetano Panariello''',
 +
'''Alberto Caprioglio''',
 +
'''Aldo Machi''',
 +
'''Rosamaria fastuca''',

Latest revision as of 18:07, 10 July 2017

Home < SlicerCMFWorkshop Italy2015
NAMIC.jpg MU.jpg UNC uni.jpg

Cranio Maxillo Facial imaging workshop using SlicerCMF

Introduction

This workshop will highlight new developments in publicly available software for image analysis and imaging based research for Dental applications. 3D image analysis continue to mandate a multidisciplinary collaborative team including clinician researchers, software engineers and computer science experts. This hands-on workshop for Cranio Maxillo Facial applications will be using SlicerCMF2.2, a newly released package by DCBIA based in Slicer 4.5.

Date and Location

November 26th to november 28th , from 9:00AM to 8:00PM, at the "Università degli Studi dell'Insubria - Varese Como" -- Italy.

Workshop Content

Presenters

  • Antonio Ruellas , Ph.D, DDS, University of Rio de Janeiro

antonioruellas@yahoo.com.br

  • Lucia Cevidanes , Ph.D, DDS, University of Michigan

luciacev@umich.edu


Preparation for the workshop

The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers. All participants are required to come with their own laptop computer and install the software and datasets prior to the event. A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory is required. Shared memory graphics boards have significantly poorer performance.

Software

Data

Folder 1: To convert DICOM to GPIL

Folder 2: To do the segmentation

Folder 3: To make models

Folder 4: For head orientation

Folder 5: To apply head orientation matrix to scan

Folder 6: To approximate manually

Folder 7: To do voxel based registration

Folder 8: To compute colormaps

Folder 9: Quantification

Folder 10: Extra materials

DCBIA Videos - Tutorial videos for the image analysis tools

Other Resources

Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC)

SPHARM-PDM publications in PubMed

Slicer user orientation

Slicer tutorials

Participant List

Andrea Pistochini, Elia Kodjo Chardey, Alessendro Bruni, Michele Vito Digregorio, Alessendra Campobassa, Federica Lorvetta, Matteo Baretta, Enrica Di Lorenzo, Viviana Conti, Giuseppa Sara Salone, Chiara Bergamini, Silvia Lupidi, Paola Lorusso, Alessandra Pisano, Manti Giusepe, Francesca Finazzi, Meneghel Matteo, Nicolo Vercellini, Piero Antonio Zecca, Giorgino Vincenzo, Paolo Scovazzi, Nicolo Defraia, Francesca Farisco, Giorgio Andrea Dolcini, Azzi Lorenco, Domenico Benagiano, Maurizio Musoas, Luigi Rubino, Dino Pregnolato, Claudia Firmani, Gaetano Panariello, Alberto Caprioglio, Aldo Machi, Rosamaria fastuca,

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