SlicerNagoyaJune2009Workshop
Contents
3D Visualization Workshop
Sponsors
Learning Objectives
The learning objectives of the workshop are to understand the basic functions of slicer in the context of image guided therapy, open igt link, programming methods to develop customized interface panel in Slicer.
Pre-requisit
The participants are expected to have account in SVN account for Intelligent-SI project. Programming environment - Compilation environment for Slicer including appropriate compiler and SVN client.
Course Faculty
- Nobuhiko Hata, Ph,D, Associate Professor of Radiology, Brigham and Women's Hospital
Logistics and Registration
- Date: Tuesday June 16, 2009
- Time: 10AM - 5:30 PM
- Location: Nagoya Institute of Technology
- Participants are required to come with their own computer (PC, Linux or MacOS) with a 3D Slicer compiled (see below for instruction).
- Bring your own lunch and snacks.
Agenda
- 11:00 AM - 11:30 AM Noby Hata arrives.
- 11:30 PM - 12:00 PM Introduction to Slicer in IGT (slide).
- 12:00 PM - 1:00 PM Lunch on your own. Confirming compilation, SVN co/ci.
- 1:00 PM - 2:30 PM Surgical Planning (segmentation, model generation, dti, registration)
- 3:00 PM - 4:30 PM Open IGT Link, STL model, joint, vtkModel (understanding MRML)
- 4:30 PM - 6:00 PM Customized GUI, skeleton generator, loadable module
- 6:00 PM - 6:30 PM Wrap-up
Pre-Workshop Preparation
The workshop is a series of hands-on sessions. Please complete the following tasks in advance of the workshop.
Please allow yourself ample preparation time. Depending on network connection and configuration of your laptop it may take anywhere from 10 to 60 minutes to complete these download and installation tasks.
The following components of the NA-MIC kit will be used during the workshop.
- 1. Slicer3: software application
- 2. Datasets: pre-computed MR datasets
Slicer3 Software
Please install the version of Slicer3 appropriate to the platform you'll be working on during the workshop
- Windows XP: Slicer3-3.2.2008-08-20-win32.exe
- Mac OSX Darwin PPC: Slicer3-3.2.2008-08-20-darwin-ppc.tar.gz
- Mac OSX Darwin Intel: Slicer3-3.2.2008-08-20-darwin-x86.tar.gz
- Linux x86: Slicer3-3.2.2008-08-20-linux-x86.tar.gz
- Linux x86-64: Slicer3-3.2.2008-08-20-linux-x86_64.tar.gz
Recommended configuration: Windows XP, Linux (x86 or x86_64), Mac OS (ppc or Intel), 2 GB of RAM and a dedicated graphic accelerator with 128 MB of on board graphic memory.
Note: Apple Mac OS X
For Mac OS 10.4.10 (Tiger) install X11 from the OS disk 1 (not installed by default on new machines).
For Mac OS 10.5 (Leopard) visit the xquartz website and install xquartz.
Datasets
Please download the following datasets for the hands-on sessions:
- Linux/Mac/Windows:
- The SlicerSampleVisualization will be used for the hands-on sessions.
- The RSNA dataset contains examples of 3D reconstructions of anatomical structures of the abdomen.
Please contact the Slicer Users mailing list for support and questions related to the software.
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