Difference between revisions of "Stanford 2008 Slicer Workshop"

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[[Image:NA-MIC_Workshop_Stanford_09-03-2008.PNG|right|400 px]]
 
==Course Syllabus==
 
==Course Syllabus==
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This workshop is an introduction to the Slicer3 software platform, part of the National Alliance for Medical Imaging Computing (NA-MIC) open-source toolkit. Participants will learn how to use Slicer3 for image analysis and 3D visualization, and how to integrate external programs with the open-source software.  
 
This workshop is an introduction to the Slicer3 software platform, part of the National Alliance for Medical Imaging Computing (NA-MIC) open-source toolkit. Participants will learn how to use Slicer3 for image analysis and 3D visualization, and how to integrate external programs with the open-source software.  
 
The workshop provides a 1/2 day end-user session geared for all levels, followed by a 1/2 day programming session geared for developers.
 
The workshop provides a 1/2 day end-user session geared for all levels, followed by a 1/2 day programming session geared for developers.
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* '''Morning Session - User and Developer Workshop - 9 am - 12 pm'''  
 
* '''Morning Session - User and Developer Workshop - 9 am - 12 pm'''  
 
** 9:00 am - 9:15 am Preliminary session: Software and data installation trouble shooting
 
** 9:00 am - 9:15 am Preliminary session: Software and data installation trouble shooting
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** 9:15 am - 9:45 am Overview of the open-source NA-MIC toolkit
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** 9:15 am - 9:45 am Overview of NA-MIC (Steve Pieper)
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** 9:45 am - 10:45 am Hands-on Session 1: 3D Data Loading and Visualization
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** 9:45 am - 10:00 am [[media:Slicer3_Introduction_SoniaPujol_Stanford2008.ppt‎ |Slicer3 and the NA-MIC Toolkit]] (Sonia Pujol)
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** 9:45 am - 10:45 am [[media:3DVisualization_SoniaPujol_Stanford2008.ppt‎ |Hands-on Session 1: 3D Data Loading and Visualization ]](Sonia Pujol)
 
** 10:45 am - 11:00 am Coffee-break
 
** 10:45 am - 11:00 am Coffee-break
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** 11:00 am - 11:45 am Hands-on Session 2: Data Saving
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** 11:00 am - 11:45 am [[media:3DVisualization_SoniaPujol_Stanford2008.ppt‎ ‎ |Hands-on Session 2: Data Saving ]](Sonia Pujol)
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** 11:45 am - 12:15 pm Discussion  
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** 11:45 am - 12:15 pm Demos and Discussion (Daniel Rubin)
  
 
*12:15 pm - 2:00 pm Lunch
 
*12:15 pm - 2:00 pm Lunch
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* '''Afternoon Session - Developer Workshop - 2:00 pm - 5:30 pm'''
 
* '''Afternoon Session - Developer Workshop - 2:00 pm - 5:30 pm'''
  
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** 2:00 pm - 2:30 pm: Introduction to the Execution model in Slicer3
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** 2:00 pm - 2:30 pm: [[media: ProgrammingIntoSlicer3_SoniaPujol_Stanford2008.ppt| Introduction to the Execution model in Slicer3 ]] (Sonia Pujol)
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** 2:30 pm - 4:00 pm : Integrating the NA-MIC kit with an external program (Part 1)
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** 2:30 pm - 4:00 pm : [[media: ProgrammingIntoSlicer3_SoniaPujol_Stanford2008.ppt| Integrating the NA-MIC kit with an external program (Part 1)]] (Sonia Pujol)
 
** 4:00 pm - 4:15 pm : Coffee break
 
** 4:00 pm - 4:15 pm : Coffee break
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** 4:15 pm - 5:15 pm : Integrating the NA-MIC kit with an external program (Part 2)
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** 4:15 pm - 5:15 pm : [[media: ProgrammingIntoSlicer3_SoniaPujol_Stanford2008.ppt| Integrating the NA-MIC kit with an external program (Part 2)]] (Sonia Pujol)
 
** 5:15 pm - 5:30 pm : Panel Discussion and Conclusion
 
** 5:15 pm - 5:30 pm : Panel Discussion and Conclusion
  
 
==Course Logistics==
 
==Course Logistics==
 
* Date: Wednesday September 3, 2008
 
* Date: Wednesday September 3, 2008
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* Location: [http://med.stanford.edu/maps/medical_buildings.html Stanford University Medical Center]: Room M112, Alway Building.
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* Location: [http://med.stanford.edu/maps/medical_buildings.html Stanford University Medical Center]: Room M112, Alway Building. [http://med.stanford.edu/maps/to-sumc.html Driving Directions] - [[media:Visitor_Parking_&_Transit_at_Stanford_University.doc‎ |Parking and Transit Options]]
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* To sign-up for this event, please send an e-mail with the subject line 'Stanford 2008 Workshop' to Sonia Pujol, Ph.D. (spujol at bwh.harvard.edu) with your contact information (Name, Title, Affiliation and Address) and the characteristics of your laptop (OS, RAM, Processor).
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* [http://transportation.stanford.edu/parking_info/VisitorParking.shtml Visitor Parking Information at Stanford]
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* '''<span style="background-color: yellow"> Registration </span><br />''' '''To sign-up for this event, please send an e-mail with the subject line ''Stanford 2008 Workshop'' to Sonia Pujol, Ph.D. '''(spujol at bwh.harvard.edu) with the following elements
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** contact information: name, title, affiliation and address
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** category: user or developer,
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** laptop characteristics: OS, RAM, Processor
  
 
== Pre-Workshop Preparation ==
 
== Pre-Workshop Preparation ==
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<span style="background-color: yellow">Please complete the following items in advance of the workshop. </span><br />
  
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* If you have registered as a end-user (morning only), please complete the [http://www.na-mic.org/Wiki/index.php/Training:Stanford_User_Workshop_Prerequisite User Prerequisites]
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* If you have registered as a programmer (morning and afternoon), please complete the [http://www.na-mic.org/Wiki/index.php/Training:Stanford_Workshop_Prerequisite Developer Prerequisites]
  
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* Please check back to this location in the next few days to obtain links for downloading the appropriate software and tutorial data sets to your laptop computer.  This needs to be completed in advance of the Workshop.
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Please contact the [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Slicer Users mailing list] for support and questions related to the software.

Latest revision as of 20:49, 4 September 2008

Home < Stanford 2008 Slicer Workshop
NA-MIC Workshop Stanford 09-03-2008.PNG

Course Syllabus

This workshop is an introduction to the Slicer3 software platform, part of the National Alliance for Medical Imaging Computing (NA-MIC) open-source toolkit. Participants will learn how to use Slicer3 for image analysis and 3D visualization, and how to integrate external programs with the open-source software. The workshop provides a 1/2 day end-user session geared for all levels, followed by a 1/2 day programming session geared for developers.

Course Faculty

  • Sonia Pujol, Ph.D., Surgical Planning Laboratory, Brigham and Women's Hospital, Harvard Medical School.
  • Steve Pieper, Ph.D., Isomics Inc.
  • Kathryn Hayes, M.S.E., Surgical Planning Laboratory, Brigham and Women's Hospital, Harvard Medical School.

Agenda

  • 12:15 pm - 2:00 pm Lunch
  • Afternoon Session - Developer Workshop - 2:00 pm - 5:30 pm

Course Logistics

Pre-Workshop Preparation

Please complete the following items in advance of the workshop.

Please contact the Slicer Users mailing list for support and questions related to the software.

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