User:Inorton

Isaiah Norton, Golby Lab, Department of Neurosurgery

contact: inorton @bwh d-t harvard d0t edu

Slicer Notes

Things that aren't fleshed-out enough to go into Mantis, or if I can't fully reproduce yet, can't share the data right now, etc..

Bugs

• Can't load high-res MEMPRAGE MRI from MGH for AG case in Slicer3. workaround: loaded fine in slicer2, then saved as nrrd.

Feature Wishes

• Better transform handling in the registration code: should sort out any hierarchies for cross-registration (ie, want to register to something that is already inside another transform)

• Put models inside appropriate transform after generation

• Editing volume inside of transform - don't want to have to move volumes out every time to change labelmaps in a complex scene.

• Tract (hyperstreamline) intersection with MR planes (highlighted with color change, ring, etc.)

• Slice intersections in 3D viewer (helps with depth perception).

Thoughts

• DTI in Slicer4

How-to-do-this

• [LoadBrainPointsIntoSlicer]

Slicer4 links

• http://www.slicer.org/slicerWiki/index.php/Slicer4:Developers
• http://www.slicer.org/slicerWiki/index.php/Slicer4:QtPort
• http://www.slicer.org/slicerWiki/index.php/Slicer4:QtPort/Tutorials
• http://www.na-mic.org/Wiki/index.php/QtAugust2010

Other Notes

SuperBuilding Slicer3 on Windows 7

Slicer3 with WrapITK for Python ITK wrapping

Tidbits

UseIntelMKLwithMatlabForFasterSPM

ExternalConnectionsToSPL

LinuxScreenCaptureMovieNotes

CTPhantomSegmentation

LoadAnalyzeIntoBrainLab

LoadfMRIIntoInstaTrak

ImageConversionUtilities