User:Inorton/dMRI Software List

NA-MIC software

• Slicer!
  • http://www.slicer.org
  • License: BSD-like

Open source software

• BioImageSuite
  • Interface: GUI
  • License: GPL
  • http://www.bioimagesuite.org/
• DTI-query and CINCH
  • Interface: preprocessing: command line; selection: GUI
  • License: BSD-like
  • http://graphics.stanford.edu/projects/dti/software/
• FMRIB Diffusion Toolbox
  • Licence: non-commercial (http://www.fmrib.ox.ac.uk/fsl/fsl/licence.html)
  • http://www.fmrib.ox.ac.uk/fsl/fdt/index.html
• MedInria
  • Interface: GUI
  • License: non-commercial
  • http://www-sop.inria.fr/asclepios/software/MedINRIA/
• Camino
  • Interface: primarily command-line
  • License: OSI Artistic License 2.0
  • http://www.cs.ucl.ac.uk/research/medic/camino/
• BrainVisa
  • Interface: pipeline builder
  • License: mix of GPL/LGPL/BSD http://brainvisa.info/doc/brainvisa/en/help/readme.html
  • http://www.brainvisa.info/

Closed-source free software

• TrackVis / DTI-Toolkit
  • Purpose: DTI analysis
  • http://www.trackvis.org
• DTI Studio
  • http://www.mristudio.org/
• MevisLab
  • Purpose: module-based, domain-specific application SDK. DTI modules exist.
  • Neurosurgery application (from IEEE Viz 2010): http://www.youtube.com/watch?v=aIgFS1S97GQ
  • http://www.mevislab.de
  • nb: free version has some restrictions on module signing and number of modules.

Commercial software with DTI functionality

• Brain Voyager QX
  • http://www.brainvoyager.com/products/brainvoyagerqx.html
• Analyze
  • http://www.analyzedirect.com/
  • collaboration: http://mayoresearch.mayo.edu/mayo/research/robb_lab/analyze.cfm

Clinical Software with DTI functionality

• BrainLab iPlan
  • http://www.brainlab.com/
• NordicNeuroLab NordicICE and BrainEx
  • http://www.nordicneurolab.com/
• Siemens "syngo DTI Tractography"
  • http://bit.ly/dJxamE [full link]