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M==Course Title==
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Slicer Tokyo WS page has been moved to
[[Image:776px-Flyer SlicerWorkshop August2009.png|right|500 px]]
 
Introduction to Opensource Software Slicer and  its Application to Image-Guided Therapy
 
  
== Course Syllabus ==
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http://wiki.na-mic.org/Wiki/index.php/Events:Slicer-Hands-On-Tokyo-2010
The purpose of this tutorial is to provide the members of the research community with a practical experience of the image processing, 3D visualization, and Image-Guided Therapy capabilities of the Open Source 3D Slicer software platform. The curriculum is '''hands-on''' which means that participants are required to attend the workshop with a suitable laptop, preloaded with the software and sample data as specified below. Attendance is limited in order to ensure quality interactions between the faculty and participants.
 
  
== Course Faculty ==
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http://wiki.na-mic.org/Wiki/index.php/OsteoMark
*Sonia Pujol, Ph.D., Instructor in Radiology, Harvard Medical School
 
Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA
 
  
*Lauren O'Donnell, Ph.D., Instructor in Radiology, Harvard Medical School
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[[Navigation Wand Project]]
Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA
 
 
 
*Kathryn Hayes, M.S.E.
 
Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA
 
 
 
*Haiying Liu, M.Eng., M.Sc.
 
Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA
 
 
 
== Logistics ==
 
*Date: Tuesday, August 25, 2009
 
*Time: 9am - 4pm
 
*Location: 1249 Boylston Street, Boston MA ([http://www.spl.harvard.edu/pages/Directions#Getting_to_1249_Boylston_Street Directions])
 
*Participants are required to come with their own computer (PC, Linux or MacOS).
 
*'''Registration is on a first-come, first-served basis and space is limited to 15 participants'''.
 
<span style="background-color: yellow"> '''To register to this event, please send an e-mail to slicer-training at bwh.harvard.edu''' </span> with your name, affiliation, contact information and the characteristics of the laptop you'll be bringing to the workshop.
 
 
 
 
 
 
== Agenda ==
 
===Morning: Introduction to Slicer===
 
*  9:00 am - 9:10 am Preliminary session: Software and data installation trouble shooting
 
*  9:10 am - 9:30 am [[Media:Slicer3 Introduction IBMISPS2009 SoniaPujol.pdf | Slicer3 Overview and Applications ]](Sonia Pujol)
 
*  9:30 am - 10:30 am [[Media:Slicer3Course_DataLoadingAndVisualization_IBMISPS2009_SoniaPujol.pdf | Hands-on Session 1: Data Loading and 3D Visualization ]](Sonia Pujol)
 
* 10:30 am - 10:45 am Coffee-break
 
* 10:45 am - 11:30 am [[Media:Slicer3Course_DataLoadingAndVisualization_IBMISPS2009_SoniaPujol.pdf | Hands-on Session 2:  Data Saving ]](Sonia Pujol)
 
* 11:30 am - 12:00 pm Discussion and Conclusion
 
* 12:00 -1pm Lunch Break
 
 
 
===Afternoon: Introduction to Slicer IGT===
 
*1:00 - 1:30 pm [[media:Slicer-IGT-Overview-IBMSPSAug2009.ppt|'''Introduction: Why Slicer3 for your IGT research? An overview of Slicer3 for IGT.''']] (15 min. O'Donnell)
 
* 1:30 - 4:00 pm [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Neurosurgical-Planning '''Neurosurgical Planning and Guidance by Slicer''']
 
**Module 1-3 (1:30-2:45 pm) (K. Hayes)
 
# Loading and visualizing anatomical MRI data
 
# Incorporating fMRI data using image registration and thresholding
 
# Creating a 3D model of the tumour volume
 
* 2:45 - 3:00 pm Coffee-break
 
**Module 4-6 (3:00-4:00 pm) (H. Liu)
 
# Predicting the locations of brain structures using image registration and a brain atlas
 
# Incorporating brain fiber tractography from diffusion weighted images
 
# Annotating the preoperative plan and saving the scene
 
 
 
== Preparation for the Workshop ==
 
Please complete the following items prior to the course. Support will be provided as requested
 
*Software Installation: Please install the newest [http://www.slicer.org/pages/Special:SlicerDownloads Slicer3.4 release ]appropriate to the computer you will be bringing to the  workshop:
 
** Windows: Slicer3-3.4-2009-05-21-win32.exe
 
** Mac OSX Darwin PPC: Slicer3-3.4.2009-05-21-darwin-ppc.tar.gz
 
** Mac OSX Darwin Intel: Slicer3-3.4.2009-05-21-darwin-x86.tar.gz
 
** Linux x86: Slicer3-3.4.2009-05-21-linux-x86.tar.gz
 
** Linux x86-64: Slicer3-3.4.2009-05-21-linux-x86_64.tar.gz
 
 
 
The [http://www.slicer.org/slicerWiki/index.php/Slicer3:Downloads instructions for installing the Slicer3 program ] describe the different steps of the procedure on Mac OS, Linux and Windows.
 
 
 
Recommended configuration: Windows XP, Linux (x86 or x86_64), Mac OS (ppc or Intel), 2 GB of RAM and a dedicated graphic accelerator with 128 MB of on board graphic memory.
 
 
 
*Data to download: Please install the [http://www.slicer.org/slicerWiki/index.php/Image:Slicer3VisualizationDataset.zip Slicer3VisualizationDataset].
 
 
 
 
 
Back to [http://www.na-mic.org/Wiki/index.php/Events NA-MIC Events]
 

Latest revision as of 14:15, 11 November 2010