Difference between revisions of "4DUSandEndoscope"

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* [http://opencv.willowgarage.com/wiki/ Open CV Wiki]
 
* [http://opencv.willowgarage.com/wiki/ Open CV Wiki]
 
* [http://wiki.intelli-si.org/index.php?title=2009SummerSecondDisplayProject Summer Second Display Project] (Japanese)
 
* [http://wiki.intelli-si.org/index.php?title=2009SummerSecondDisplayProject Summer Second Display Project] (Japanese)
 +
 +
=== Bug Fixes for the 3D Slicer Module ===
 +
 +
* There is a bug in OpenCV related to V4L2 devices:
 +
** Here is the bugtrac with information: [[https://bugs.launchpad.net/ubuntu/+source/linux/+bug/260251]]
 +
*** Somehow this is related to bttv 878 cards. OpenCV seem not to be able to handle all output of the card correctly
 +
** Here is the fix [[http://opencvlibrary.svn.sourceforge.net/viewvc/opencvlibrary/trunk/opencv/src/highgui/cvcap_v4l.cpp?r1=1604&r2=1609]]
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*** Apply the changes of revision 1609 to the file # opencv/src/highgui/cvcap_v4l.cpp
  
 
=== Progress ===
 
=== Progress ===

Revision as of 09:04, 4 August 2009

Home < 4DUSandEndoscope

Project Page for 4D Ultrasound with Endoscopic Overlay

Collaborators

Jan Gumprecht

  • E-Mail: jgumprec(at)bwh.harvard.edu
  • Location: Kyushu, Japan
  • Timezone: GMT + 9

Jae-Sung Hung, PhD

  • E-Mail: hong(at)dem.med.kyushu-u.ac.jp
  • Location: Kyushu, Japan
  • Timezone: GMT + 9

Nobuhiko Hata, PhD

  • E-Mail: hata(at)bwh.harvard.edu
  • Location: Boston, USA
  • Timezone: GMT - 5

Haiying Liu

  • E-Mail: hliu(at)bwh.harvard.edu
  • Location: Boston, USA
  • Timezone: GMT - 5

Yamada Atsushi, PhD

  • E-Mail: yamada.atsushi(at)nitech.ac.jp
  • Location: Nagoya, Japan
  • Timezone: GMT + 9

Project Description

The goal of this project is to create a new 3D Slicer Module that can overlay patient registered 4D US volumes with endoscopic images.

The Project is divided into four part: 4D Ultrasound Volume Reconstruction, Patient-Image Registration, Endoscope Overlay, and Endoscope Calibration. All four parts will be accessable through a single 3D Slicer Module.

ModuleWorkflow.png

Overall Progress

Month Week # Start Date - End Date Done Date Done
Week 34 17.08 - 23.08
Week 33 10.08 - 16.08
Endoscopic Overlay and Endoscopic Calibration shall be finished
August Week 32 03.08.09 - 09.08.09
New PC set up x Thu Jul, 30th
New PC arrived x Tue Jul, 28th
Week 31 27.07 - 02.08
Project Page created x Fri Jul, 24th
July Week 30 20.07.09 - 26.07.09

General To Do

Tasks
O Fill Project Page with Information
O Order new Frame Grabber Card
DONE Set Up New Computer
DONE Order new PC
DONE Create Project Page

Details

  • The following frame grabber card only provides grayscale images: I-O DATA GV-VCP3R/PCI (video decoder chip CX2388x) [1]


3D Slicer Module

  • Responsible: Jan Gumprecht

Details

Progress

Month Week # Start Date - End Date Done Date Done
Week 34 17.08 - 23.08
Week 33 10.08 - 16.08
August Week 32 03.08.09 - 09.08.09
Week 31 27.07 - 02.08
Create first prototype of model x Fri, Jul 25th
July Week 30 20.07.09 - 26.07.09

To Do

Tasks
O Create first prototyp of module
O Comprehend Prostate nav module's source code
O Read docu of Prostate nav module


4D Ultrasound Volume Reconstruction

  • Responsible: Jan Gumprecht

Details

The project is described here: [[2]]

Progress

Month Week # Start Date - End Date Done Date Done
Week 34 17.08 - 23.08
Week 33 10.08 - 16.08
August Week 32 03.08.09 - 09.08.09
Update Calibration and Spacing Handeling
New Commandline parameter added to grab a test image x Tue, Jul 30th
All parameters of the calibration file are now used x Tue, Jul 28th
OpenIGTLink is now externally, no local copy within the source code is used anymore x Mon, Jul 27th
Week 31 27.07 - 02.08
Show demo of the system
July Week 30 20.07.09 - 26.07.09

To Do

Tasks
O Find Segmentation Fault
O Update Handling of Spacing
O Update Calibration Part
DONE Set up existing Hardware for first demo
DONE Update CalibrationFileReader


Patient-Image Registration

  • Responsible: Jae-Sung Hong

Details

Progress

Month Week # Start Date - End Date Done Date Done
Week 34 17.08 - 23.08
Week 33 10.08 - 16.08
August Week 32 03.08.09 - 09.08.09
Start integration with 4D Ultrasound
Week 31 27.07 - 02.08


July Week 30 20.07.09 - 26.07.09

To Do

Tasks
O Dummy Task


Endoscope Overlay

  • Responsible: Yamada Atsushi, Haiying Liu

Details

Bug Fixes for the 3D Slicer Module

  • There is a bug in OpenCV related to V4L2 devices:
    • Here is the bugtrac with information: [[3]]
      • Somehow this is related to bttv 878 cards. OpenCV seem not to be able to handle all output of the card correctly
    • Here is the fix [[4]]
      • Apply the changes of revision 1609 to the file # opencv/src/highgui/cvcap_v4l.cpp

Progress

Month Week # Start Date - End Date Done Date Done
Week 34 17.08 - 23.08
Week 33 10.08 - 16.08
Endoscopic Overlay shall be finished
August Week 32 03.08.09 - 09.08.09
Week 31 27.07 - 02.08
July Week 30 20.07.09 - 26.07.09

To Do

Tasks
O Dummy Task
Endoscope overlay


Endoscope Calibration

  • Responsible: Dr. Yang

Details

Progress

Month Week # Start Date - End Date Done Date Done
Week 34 17.08 - 23.08
Week 33 10.08 - 16.08
Endoscopic Calibration shall be finished
August Week 32 03.08.09 - 09.08.09
Week 31 27.07 - 02.08
July Week 30 20.07.09 - 26.07.09

To Do

Tasks
O Dummy Task
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