Difference between revisions of "NA"

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'''Abstract'''<nowiki>: </nowiki>[[FE_Mesh_Project_Abstract|FE Mesh Project Abstract]]
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{| border="1"
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|- bgcolor="#ddffff"
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| '''Contents'''
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| '''Presentation'''
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| '''Data'''
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|- bgcolor="#ddffff"
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| '''Slicer'''
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|- bgcolor="#ddffff"
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| Loading and Viewing Data
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[[Media:SlicerTraining1LoadingAndViewingData.ppt|Slicer Training 1 ]]
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[[Media:Tutorial-with-dicom.zip|Dataset Training 1]]
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|- bgcolor="#ddffff"
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| Manual Segmentation and Model Making
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[[Media:Slicer_Segmentation_Tutorial.ppt|Slicer Training 2 ]]
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[[Media:Tutorial-with-dicom.zip|Dataset Training 2]]
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|- bgcolor="#ddffff"
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| Level-Set Segmentation
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|
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[[Media:03-LevelSet.ppt|Slicer Training 3]]
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[[Media:Tutorial-with-dicom.zip|Dataset Training 3]]
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|- bgcolor="#ddffff"
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| Diffusion Tensor Imaging
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|
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[[Media:Slicer_DTMRI_Training4.ppt| Slicer Training 4]]
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[[Media:SlicerSampleDTI.zip| Dataset Training 4.1]] [[Media:Dwi-dicom.zip|Dataset Training 4.2]]
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|- bgcolor="#ddffff"
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| Functional Magnetic Resonance Imaging
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|
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[[Media:SlicerTraining5_fMRI.ppt| Slicer Training 5]]
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[[Media:FMRIData1_short.zip|Dataset Training 5.1]] [[Media:FMRIData2_long.zip|Dataset Training 5.2]]
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|- bgcolor="#ddffff"
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| vtkFreeSurferReaders
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|
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[[Media:SlicerTraining6_vtkFreeSurferReaders.ppt| Slicer Training 6 ]]
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[[Media:FreeSurferSubjects.zip|Dataset Training 6 ]]
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|- bgcolor="#ddffff"
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| Saving Data
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[[Media:SlicerTraining7SavingData.ppt| Slicer Training 7]]
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[[Media:Tutorial-with-dicom.zip|Dataset Training 7]]
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|- bgcolor="#ddffff"
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| Nrrd File Format
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[[Media:SlicerTraining8-NrrdFileFormat.ppt| Slicer Training 8]]
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[[Media:Tensor_data.zip|Dataset Training 8]]
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|- bgcolor="#ddffff"
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| Dicom to Nrrd Conversion
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[[Media:SlicerTraining9_DTI-FromDicomToNrrd.ppt| Slicer Training 9]]
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[[Media:Dwi-dicom.zip|Dataset Training 9]]
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|- bgcolor="#ddffff"
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| EMBrainAtlasClassifier
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[[Media:SlicerAdvancedTraining_EMBrainAtlasClassifier_V1.0.ppt| Slicer Advanced: EMBrainAtlasClassifier ]]
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[[Media:BrainAtlasClassifier.zip|Dataset Training 10 ]]
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|- bgcolor="#ddffff"
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| '''fMRI Statistical Analysis'''
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[http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2004/CourseHome/ HST.583 Functional Magnetic Resonance Imaging]
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[http://mgh-edu.nbirn.net/tutorial.html Tutorial documentation]
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<br />
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|}
  
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'''Grant #'''<nowiki>: 1R01EB005973 </nowiki>
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<br />
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'''Key Personnel'''<nowiki>: Nicole Grosland, Vincent Magnotta, Steve Pieper, and Simon Warfield. </nowiki>
 
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'''Projects'''<nowiki>: Active projects in this collaboration are listed here: </nowiki>[[NA-MIC_Collaborations#PAR-06-223_Automated_FE_Mesh_Development|NA-MIC_Collaborations#PAR-06-223_Automated_FE_Mesh_Development]]
 
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'''Publications'''<nowiki>: </nowiki>
 
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'''Meetings and Events Specific to this Collaboration'''<nowiki>: </nowiki>
 
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* Vince Magnotta presented background information about the data acquisitioin and validation at the [[AHM_2006:AHM_2006|2006 NA-MIC AHM]] (Slides: [[Media:NA-MIC_Surface-Scan.ppt|Validation of Bone Models using 3D Surface Scanning]]).
 
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* [[2006_November_Meshing_Project_Visit|November 7-8, 2006: Meshing Collaborator Project Visit to BWH]]
 
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'''Resource Links'''
 
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* [http://www.hpfem.jku.at/netgen/ netget]
 
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* [http://libmesh.sourceforge.net/ libmesh]
 
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* Mesh warping project at the SPL (Steve Haker):
 
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** http://splweb.bwh.harvard.edu:8000/pages/papers/haker/haker-miccai2004.pdf
 

Revision as of 14:04, 18 December 2006

Home < NA
Contents Presentation Data
Slicer
Loading and Viewing Data

Slicer Training 1

Dataset Training 1

Manual Segmentation and Model Making

Slicer Training 2

Dataset Training 2

Level-Set Segmentation

Slicer Training 3

Dataset Training 3

Diffusion Tensor Imaging

Slicer Training 4

Dataset Training 4.1 Dataset Training 4.2

Functional Magnetic Resonance Imaging

Slicer Training 5

Dataset Training 5.1 Dataset Training 5.2

vtkFreeSurferReaders

Slicer Training 6

Dataset Training 6

Saving Data

Slicer Training 7

Dataset Training 7

Nrrd File Format

Slicer Training 8

Dataset Training 8

Dicom to Nrrd Conversion

Slicer Training 9

Dataset Training 9

EMBrainAtlasClassifier

Slicer Advanced: EMBrainAtlasClassifier

Dataset Training 10

fMRI Statistical Analysis

HST.583 Functional Magnetic Resonance Imaging

Tutorial documentation



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