Difference between revisions of "2010 Summer Project Week/The Vascular Modeling Toolkit in 3D Slicer"
(in progress..) |
|||
Line 27: | Line 27: | ||
<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
− | The plan for the project week is to create a new VMTK based module for network extraction of vascular trees. Network extraction is comparable to vessel centerlines | + | The plan for the project week is to create a new VMTK based module for network extraction of vascular trees. Network extraction is comparable to vessel centerlines with a little bit less accuracy but faster. The algorithm works on a triangulated surface of segmented vessels and would fit in the pipeline of existing VMTK modules. |
− | |||
− | |||
− | |||
− | |||
</div> | </div> | ||
Line 38: | Line 34: | ||
<h3>Progress</h3> | <h3>Progress</h3> | ||
− | + | The following pages show the documentation of already existing VMTK in 3D Slicer modules: | |
+ | * VmtkSlicerModule - the | ||
</div> | </div> |
Revision as of 02:29, 17 June 2010
Home < 2010 Summer Project Week < The Vascular Modeling Toolkit in 3D SlicerKey Investigators
- UPENN: Daniel Haehn, Kilian Pohl
- Mario Negri Institute, Italy: Luca Antiga
- SPL: Steve Pieper, Ron Kikinis
Objective
The Vascular Modeling Toolkit (VMTK) is a collection of libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis for image-based modeling of blood vessels.
Parts of VMTK were already integrated to 3D Slicer and f.e. can be combined to a pipeline for centerline extraction of vascular trees. This pipeline consisting of Vessel Enhancement filtering, level set segmentation and the actual centerline extraction was tested on different cases.
The official project page: http://www.vmtk.org/Main/VmtkIn3DSlicer
Approach, Plan
The plan for the project week is to create a new VMTK based module for network extraction of vascular trees. Network extraction is comparable to vessel centerlines with a little bit less accuracy but faster. The algorithm works on a triangulated surface of segmented vessels and would fit in the pipeline of existing VMTK modules.
Progress
The following pages show the documentation of already existing VMTK in 3D Slicer modules:
- VmtkSlicerModule - the
Delivery Mechanism
This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)
- Slicer Module
- Extension -- loadable YES
References
- Antiga L, Piccinelli M, Botti L, Ene-Iordache B, Remuzzi A and Steinman DA. An image-based modeling framework for patient-specific computational hemodynamics. Medical and Biological Engineering and Computing, 46: 1097-1112, Nov 2008.
- D. Hähn. Integration of the vascular modeling toolkit in 3d slicer. SPL, 04 2009. Available online at http://www.spl.harvard.edu/publications/item/view/1728.
- D. Hähn. Centerline Extraction of Coronary Arteries in 3D Slicer using VMTK based Tools. Master's Thesis. Department of Medical Informatics, University of Heidelberg, Germany. Feb 2010.
- Piccinelli M, Veneziani A, Steinman DA, Remuzzi A, Antiga L (2009) A framework for geometric analysis of vascular structures: applications to cerebral aneurysms. IEEE Trans Med Imaging. In press.