Difference between revisions of "2014 Project Week:TBISegmentation"
From NAMIC Wiki
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<h3>Objective</h3> | <h3>Objective</h3> | ||
| − | * | + | * Develop a pipeline combining our TBI segmentation algorithm with other Slicer modules. |
| − | * | + | * Study and gain understanding of the manual process for segmenting TBI |
| − | * | + | * Test the algorithm with users from USC. |
</div> | </div> | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
| − | * | + | * Wrap existing code into a Slicer extension |
| − | * | + | * Determine approaches for user interaction for semi-automatic segmentation segmentation. |
| − | * | + | * Test and evaluate Slicer modules for TBI processing: |
| − | + | ** Intra and inter time points coregistration | |
| + | ** Initial atlas alignment using affine transformation | ||
| + | ** Skull stripping to obtain initial brain mask | ||
</div> | </div> | ||
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| + | |||
| + | == Reference == | ||
| + | * [http://www.nitrc.org/projects/parser_4d 4D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)] | ||
Revision as of 14:24, 6 January 2014
Home < 2014 Project Week:TBISegmentation
Interactive process
Key Investigators
- GE: Marcel Prastawa
- Utah: Bo Wang, Guido Gerig
- USC: Andrei Irimia, Jack Van Horn
Project Description
Objective
- Develop a pipeline combining our TBI segmentation algorithm with other Slicer modules.
- Study and gain understanding of the manual process for segmenting TBI
- Test the algorithm with users from USC.
Approach, Plan
- Wrap existing code into a Slicer extension
- Determine approaches for user interaction for semi-automatic segmentation segmentation.
- Test and evaluate Slicer modules for TBI processing:
- Intra and inter time points coregistration
- Initial atlas alignment using affine transformation
- Skull stripping to obtain initial brain mask
