Difference between revisions of "PET Tumor Segmentation"

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==Project Description==
 
==Project Description==
* Tool webpage: http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/PETTumorSegmentationEffect
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[[File:Pet_lesions_mip.png|400px|PET MIP with head and neck lesions]]
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[[File:Pet_lesions_segmented.png|400px|segmented lesion]]
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* Tool webpage: https://www.slicer.org/wiki/Documentation/Nightly/Modules/PETTumorSegmentationEffect
 
* Github repository: https://github.com/chribaue/PETTumorSegmentation.git
 
* Github repository: https://github.com/chribaue/PETTumorSegmentation.git
  
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* switched to most recent version of 3D Slicer and verified correct behavior
 
* switched to most recent version of 3D Slicer and verified correct behavior
 
* created webpage with user documentation
 
* created webpage with user documentation
* put extension onto github and submitted for integration into Slicer extensions manager
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* put extension into Slicer extension manager system
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* already available on Extension Manager
  
 
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[[File:PETTumorSegmentationEffect_options.png|400px|PET Tumor Segmentation Editor Effect Options]]
 
[[File:PETTumorSegmentationEffect_options.png|400px|PET Tumor Segmentation Editor Effect Options]]
 
[[File:PETTumorSegmentation_Effect_with_models.png|600px|PET Tumor Segmentation Editor Effect]]
 
[[File:PETTumorSegmentation_Effect_with_models.png|600px|PET Tumor Segmentation Editor Effect]]
[[File:Pet_lesions_mip.png|400px|PET MIP with head and neck lesions]]
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[[File:Pet_lesions_segmented.png|400px|segmented lesion]]
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[[File:Extension_Managers_PETTumorSegmentation.png|400px|PET Tumor Segmentation Extension in Extension Manager]]

Latest revision as of 17:15, 10 July 2017

Home < PET Tumor Segmentation

Key Investigators

Christian Bauer (University of Iowa)

Project Description

PET MIP with head and neck lesions segmented lesion

Objective

  • Finalize tool for tumor and lymph node segmentation in PET scans
  • Make it publicly available through Slicer Extension Manager
  • Segmentation method based on Markus van Tol (2014): A Graph-Based Method for Segmentation of Tumors and Lymph Nodes in Volumetric PET Images, The University of Iowa

Approach, Plan

  • Main functionality of the tool has already been developed
  • Write self tests
  • replace solver with Slicer-license compatible solver
  • fine-tune GUI, prepare icon, etc.
  • document and clean up source code
  • create webpage with documentation and usage tutorial
  • get module into Slicer extension management system
  • potentially: add functionality to obtain quantitative measurements immediately during segmentation process

Progress

  • wrote self tests
  • cleaned source code
  • switched to new solver and verified correct behavior
  • switched to most recent version of 3D Slicer and verified correct behavior
  • created webpage with user documentation
  • put extension into Slicer extension manager system
  • already available on Extension Manager

Screenshots

PET Tumor Segmentation Editor Effect Options PET Tumor Segmentation Editor Effect

PET Tumor Segmentation Extension in Extension Manager