Difference between revisions of "2008 Winter Project Week Tractography"

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**9:00am:  Guido Gerig, Overview of Project goals and progress to date [http://www.na-mic.org/Wiki/index.php/Projects/Diffusion/Contrasting_Tractography_Measures tractography  methods see this page for background]
+
**9:00am:  Guido Gerig, Overview of Project goals and progress to date including Santa Fe meeting
**9:15 Sonia Pujol (BWH) Streamline Tractography in Slicer2.7 using ROI and Whole Brain Seeding
+
**9:15am: Randy Gollub, Morphometry BIRN DTI acquisition and analysis update
**9:30 Sylvain Gouttard (Utah) FiberViewer
+
**9:25am: Randy Gollub, MIND Reliability dataset goals
**9:45 Tri Ngo (MIT/BWH) Stochastic Tractography
+
[http://www.na-mic.org/Wiki/index.php/Projects/Diffusion/Contrasting_Tractography_Measures tractography  methods see this page for background]
**10:00 John Melonakos (Georgia Tech) [[media:NAMICTractographyConferenceGeorgiaTech.ppt|Geodesic Tractography Segmentation]]
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**9:35 Sonia Pujol (BWH) Streamline Tractography in Slicer 2.7 using ROI and Whole Brain Seeding
 +
**9:45 Sylvain Gouttard (Utah) FiberViewer
 +
**9:55 Tri Ngo (MIT/BWH) Stochastic Tractography
 +
**10:05 John Melonakos (Georgia Tech) [[media:NAMICTractographyConferenceGeorgiaTech.ppt|Geodesic Tractography Segmentation]]
 
**10:15  Vince Magnotta (UIowa) GTract
 
**10:15  Vince Magnotta (UIowa) GTract
*10:30am: coffee break
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**10:25 Ross Whitaker/Tom Fletcher (Utah) Volumetric Connectivity
**11:00 Ross Whitaker/Tom Fletcher (Utah) Volumetric Connectivity
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*10:35am: coffee break
**11:15 Casey Goodlett (Utah) DTI Atlas
+
**11:00 Casey Goodlett (Utah) DTI Atlas
**11:30 Sonia Pujol (BWH)  Cross algorithm summary statistics
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**11:10 Sonia Pujol (BWH)  Cross algorithm summary statistics
*12:15pm: lunch
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**11:25 Ross Whitaker to kick-off discussion of Tractography results with summarizing ideas
**1:30- 3:00  
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*12:00pm: lunch
Ross Whitaker to kick-off discussion of Tractography results with summarizing ideas & focus on next steps
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**1:30- 3:00 Continue discussion of Tractography results with focus on:
 
***Data formats and coordinate system requirements/guidelines/recommendations
 
***Data formats and coordinate system requirements/guidelines/recommendations
 
***Quality control methods and implementation
 
***Quality control methods and implementation

Revision as of 18:10, 18 December 2007

Home < 2008 Winter Project Week Tractography
    • 9:00am: Guido Gerig, Overview of Project goals and progress to date including Santa Fe meeting
    • 9:15am: Randy Gollub, Morphometry BIRN DTI acquisition and analysis update
    • 9:25am: Randy Gollub, MIND Reliability dataset goals

tractography methods see this page for background

    • 9:35 Sonia Pujol (BWH) Streamline Tractography in Slicer 2.7 using ROI and Whole Brain Seeding
    • 9:45 Sylvain Gouttard (Utah) FiberViewer
    • 9:55 Tri Ngo (MIT/BWH) Stochastic Tractography
    • 10:05 John Melonakos (Georgia Tech) Geodesic Tractography Segmentation
    • 10:15 Vince Magnotta (UIowa) GTract
    • 10:25 Ross Whitaker/Tom Fletcher (Utah) Volumetric Connectivity
  • 10:35am: coffee break
    • 11:00 Casey Goodlett (Utah) DTI Atlas
    • 11:10 Sonia Pujol (BWH) Cross algorithm summary statistics
    • 11:25 Ross Whitaker to kick-off discussion of Tractography results with summarizing ideas
  • 12:00pm: lunch
    • 1:30- 3:00 Continue discussion of Tractography results with focus on:
      • Data formats and coordinate system requirements/guidelines/recommendations
      • Quality control methods and implementation
      • ROIs: what works, what doesn't, what to do?
      • registration &/or resampling to support visit 1- visit 2 analysis and group analysis
      • Freesurfer to B0 transform for white matter mask
      • quantification of registration error and its propagation forward and impact on final results
      • plans for data sharing curation and timeline (integration with XNAT project)
      • outcome metrics and how to best frame scientific questions for this project
  • 3pm: coffee break
    • 3:15 Dan Marcus to lead discussion of effort required to post this dataset and results on XNAT Central or XNAT NAMIC or what?
    • 4:00 Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development


Back to AHM_2008, Events