Difference between revisions of "Projects:DTI DWI QualityControl"

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DTIPrep as the first comprehensive and fully automatic pre-processing tool for DWI and DTI quality control can provide a crucial piece for robust DTI analysis studies. The protocoling, reporting, visual controlling and data correction capabilities are used to produce high consistence and inter-rater reliable QC results. This framework is organized by pipeline steps include: 1) image info checking, 2) diffusion info checking, 3) Slice-wise intensity checking, 4) Interlace-wise intensity checking, 5) Averaging baselines, 6) Eddy-motion correction, 7) gradient-wise checking, 8) Computing DTI measurements and saving.  
 
DTIPrep as the first comprehensive and fully automatic pre-processing tool for DWI and DTI quality control can provide a crucial piece for robust DTI analysis studies. The protocoling, reporting, visual controlling and data correction capabilities are used to produce high consistence and inter-rater reliable QC results. This framework is organized by pipeline steps include: 1) image info checking, 2) diffusion info checking, 3) Slice-wise intensity checking, 4) Interlace-wise intensity checking, 5) Averaging baselines, 6) Eddy-motion correction, 7) gradient-wise checking, 8) Computing DTI measurements and saving.  
  
As further extended-DTIprep, our experiments show that the residual artifacts presence after DTIPrep QC can be detected and corrected using knowledge of DTI. We introduce new entropy-based measurement of the DTI data from Principal Directions histogram of the entire image. After training our measurement, the QC is applied on assessing DTI information within gray-matter regions, white-matter areas or the entire image. Thus, DTI artifacts are detected if an unusually high-degree of PDs clusters or unusually uniform distribution are found.
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As further extended-DTIprep, our experiments show that the residual artifacts presence after DTIPrep DWIs QC can be detected and corrected using knowledge of DTI. We introduce new entropy-based measurement of the DTI data from Principal Directions histogram of the entire image. After training our measurement, the QC is applied on assessing DTI information within gray-matter regions, white-matter areas or the entire image. Thus, DTI artifacts are detected if an unusually high-degree of PDs clusters or unusually uniform distribution are found.
  
  

Revision as of 19:21, 3 November 2011

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Diffusion Tensor and Diffusion Weighted Imaging Quality Control

DWIs data suffer from inherent low SNR, overall long scanning time of multiple directional encoding with correspondingly large risk to encounter several kinds of artifacts. These artifacts can be too severe for a correct and stable estimation of the diffusion tensor. Thus, a quality control (QC) procedure is absolutely necessary for DTI studies. We are developing a framework, called DTIPrep for assessing and correcting DWIs and DTI.

Description

DTIPrep as the first comprehensive and fully automatic pre-processing tool for DWI and DTI quality control can provide a crucial piece for robust DTI analysis studies. The protocoling, reporting, visual controlling and data correction capabilities are used to produce high consistence and inter-rater reliable QC results. This framework is organized by pipeline steps include: 1) image info checking, 2) diffusion info checking, 3) Slice-wise intensity checking, 4) Interlace-wise intensity checking, 5) Averaging baselines, 6) Eddy-motion correction, 7) gradient-wise checking, 8) Computing DTI measurements and saving.

As further extended-DTIprep, our experiments show that the residual artifacts presence after DTIPrep DWIs QC can be detected and corrected using knowledge of DTI. We introduce new entropy-based measurement of the DTI data from Principal Directions histogram of the entire image. After training our measurement, the QC is applied on assessing DTI information within gray-matter regions, white-matter areas or the entire image. Thus, DTI artifacts are detected if an unusually high-degree of PDs clusters or unusually uniform distribution are found.


alt Diffusion Weighted Imaging and Diffusion Tensor Imaging Quality Control_DTIPrep
alt 3D view of gradients before and after Quality Control procedures

Publications

Key Investigators

  • UNC Algorithms: Mahshid Farzinfar, Zhexing Liu, Martin Styner, Clement Vachet
  • Utah Algorithms: Tom Fletcher, Ross Whitaker, Guido Gerig, Sylvain Gouttard

Links