Difference between revisions of "Engineering:2005 Programming Week Results"
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==Summary== | ==Summary== | ||
The first NA-MIC Programming Week was successfully concluded on July 1, 2005 at MIT. It recorded 44 attendees who worked actively on 15 projects. A consolidated summary of all projects is available [[Media:2005_Programming_Week_Summary.ppt|here as a ppt]]. | The first NA-MIC Programming Week was successfully concluded on July 1, 2005 at MIT. It recorded 44 attendees who worked actively on 15 projects. A consolidated summary of all projects is available [[Media:2005_Programming_Week_Summary.ppt|here as a ppt]]. | ||
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=== Applications === | === Applications === | ||
− | + | # [[Media:Prog_week_05_nonrigid_epi_registration_2.ppt|Non Rigid EPI Registration Powerpoint]]: Source in Sandbox | |
− | # [[Media:Prog_week_05_nonrigid_epi_registration_2.ppt|Non Rigid EPI Registration Powerpoint]] | + | # [[Media:Namic-tractanalysis.ppt|Quantitative Fiber Tract Analysis Powerpoint]]: Source in Sandbox, some code incorporated into FiberViewer |
− | # [[Media:Namic-tractanalysis.ppt|Quantitative Fiber Tract Analysis Powerpoint]] | + | # [[Media:DLPFCTemplate.ppt| Rule-based DLPFC Segmentation Powerpoint]]: Source in Sandbox |
− | # [[Media:DLPFCTemplate.ppt| Rule-based DLPFC Segmentation Powerpoint]] | ||
=== Algorithms/Algorithm Infrastructure === | === Algorithms/Algorithm Infrastructure === | ||
− | # [[Media:Slide1.ppt|3D Adaptive Tetrahedral Mesh Generation in ITK]] | + | # [[Media:Slide1.ppt|3D Adaptive Tetrahedral Mesh Generation in ITK]]: Source in sandbox |
# [[Media:SlideBlloydnew.ppt|2D/3D Point-Landmark Detection]] | # [[Media:SlideBlloydnew.ppt|2D/3D Point-Landmark Detection]] | ||
− | # [[Media:ProgWeek05ProjectDescShapeDesc.ppt| Shape Description]] | + | # [[Media:ProgWeek05ProjectDescShapeDesc.ppt| Shape Description]]: Source code in sandbox, submission to insight journal soon, some visualization code incorporated back into SOViewer |
− | # [[Media:ProgWeek05ProjectDescStatShapeAnalFrame.ppt| Shape Analysis]] | + | # [[Media:ProgWeek05ProjectDescStatShapeAnalFrame.ppt| Shape Analysis]]: Not yet in coding stage |
− | # [[Media:BayesianProgWeekProject.ppt| Bayesian Segmentation]] | + | # [[Media:BayesianProgWeekProject.ppt| Bayesian Segmentation]]: Source in ITK CVS repository and NAMIC SandBox |
# [[Media:FluxDiffusion.ppt| Flux Diffusion]] | # [[Media:FluxDiffusion.ppt| Flux Diffusion]] | ||
=== Software Infrastructure === | === Software Infrastructure === | ||
− | # [[Media:ITKuProjectPlan.ppt|ITKu| Software Infrastructure: ITKu]] | + | # [[Media:ITKuProjectPlan.ppt|ITKu| Software Infrastructure: ITKu]]: Source in sourceforge teem repository (itku module: cvs.sourceforge.net:/cvsroot/teem co itku) |
# [[Media:Namic-nrrdIO.ppt|Software Infrastructure: NRRD IO]] | # [[Media:Namic-nrrdIO.ppt|Software Infrastructure: NRRD IO]] | ||
# [[Media:Prog_week_dtmri_test.ppt|Software Infrastructure: Slicer DTMRI Nightly Testing]] | # [[Media:Prog_week_dtmri_test.ppt|Software Infrastructure: Slicer DTMRI Nightly Testing]] | ||
− | # [[Media:ProgWeek05ProjectDescLONI.ppt|Software Infrastructure: LONI Pipeline Integration of UNC Shape Analysis Pipeline]] | + | # [[Media:ProgWeek05ProjectDescLONI.ppt|Software Infrastructure: LONI Pipeline Integration of UNC Shape Analysis Pipeline]]: LONI example pipelines in Sandbox |
# [[Media:2005_UCSD_ProgrammingWeek-final.ppt|Software Infrastructure: Large Scale Algorithm Job Submission via Condor]] | # [[Media:2005_UCSD_ProgrammingWeek-final.ppt|Software Infrastructure: Large Scale Algorithm Job Submission via Condor]] | ||
# [[Media:Slicer-architecture-discussion-followup.ppt|Slicer 3.0 Architecture Kickoff]] | # [[Media:Slicer-architecture-discussion-followup.ppt|Slicer 3.0 Architecture Kickoff]] |
Latest revision as of 18:26, 9 December 2016
Home < Engineering:2005 Programming Week ResultsBack to Events
Summary
The first NA-MIC Programming Week was successfully concluded on July 1, 2005 at MIT. It recorded 44 attendees who worked actively on 15 projects. A consolidated summary of all projects is available here as a ppt.
Link to actual Programming Week Event, MIT Summer, 2005
Submissions to Insight Journal
- A Quantitative DTI Fiber Tract Analysis Suite
- Knowledge-Based Segmentation of Brain MRI Scans Using the Insight Toolkit
- Tetrahedral mesh generation for medical imaging
- Comparison of Salient Point Detection Methods for 3D Medical Images
One-Slide Summary from Programming Week Projects
Applications
- Non Rigid EPI Registration Powerpoint: Source in Sandbox
- Quantitative Fiber Tract Analysis Powerpoint: Source in Sandbox, some code incorporated into FiberViewer
- Rule-based DLPFC Segmentation Powerpoint: Source in Sandbox
Algorithms/Algorithm Infrastructure
- 3D Adaptive Tetrahedral Mesh Generation in ITK: Source in sandbox
- 2D/3D Point-Landmark Detection
- Shape Description: Source code in sandbox, submission to insight journal soon, some visualization code incorporated back into SOViewer
- Shape Analysis: Not yet in coding stage
- Bayesian Segmentation: Source in ITK CVS repository and NAMIC SandBox
- Flux Diffusion
Software Infrastructure
- ITKu| Software Infrastructure: ITKu: Source in sourceforge teem repository (itku module: cvs.sourceforge.net:/cvsroot/teem co itku)
- Software Infrastructure: NRRD IO
- Software Infrastructure: Slicer DTMRI Nightly Testing
- Software Infrastructure: LONI Pipeline Integration of UNC Shape Analysis Pipeline: LONI example pipelines in Sandbox
- Software Infrastructure: Large Scale Algorithm Job Submission via Condor
- Slicer 3.0 Architecture Kickoff
Additional NA-MIC Engineering Interactions / Benefits
- Registration
- Linear and Non-Linear vtkITK Registration Modules Now Available in Slicer
- I/O
- vtkITK based Generic Readers in Slicer
- vtkNRRDReader handles measurement frames, space directions, gradients for DWI
- fMRI
- ITK Statistics framework underway
- Editor
- Collaboration with Simbios NCBC at Stanford to adapt Slicer Editor for Musculoskeletal MRI