Difference between revisions of "2009 Summer Project Week Lupus Lesion Segmentation"

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__NOTOC__
 
__NOTOC__
 
<gallery>
 
<gallery>
Image:PW2009-v3.png|[[2009_Summer_Project_Week|Project Week Main Page]]
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Image:PW2009-v3.png|[[2009_Summer_Project_Week#Projects|Projects List]]
 
Image:lesionManual-PW2009.png|Manual tracing of lupus lesions.
 
Image:lesionManual-PW2009.png|Manual tracing of lupus lesions.
 
Image:lesionHeatMap-PW2009.png|Predicted Heat Map.
 
Image:lesionHeatMap-PW2009.png|Predicted Heat Map.
 
Image:lesionThreshold-PW2009.png|Heat Map after thresholding.
 
Image:lesionThreshold-PW2009.png|Heat Map after thresholding.
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Image:LesionInBrain-PW2009.png|Lesion model inside brain.
 
</gallery>
 
</gallery>
  
 
==Key Investigators==
 
==Key Investigators==
* H. Jeremy Bockholt
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* MRN: H. Jeremy Bockholt, Mark Scully
* Mark Scully
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* Isomics: Steve Pieper
* Steve Pieper
 
  
 
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<h3>Objective</h3>
 
<h3>Objective</h3>
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To create an end-to-end Lupus lesion segmentation and analysis pipeline that can work in both an automated and semi-supervised fashion.
  
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See our [[DBP2:MIND:Roadmap| Roadmap]] for more details.
  
 
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<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
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Our approach involves the combination of morphometric features with a non-linear classifier in order to capture more of the gestalt properties a human rater uses when segmenting Lupus lesions.
  
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Our plan for the project week is to:
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* Work with Steve Pieper to implement the wizard interface to the lesion analysis module to make the segmentation process easier.
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* Refactor the lesion analysis code and integrate it with the Slicer code repository so it is built with Slicer.
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* Meet with the white matter lesion segmentation group to discuss overlap.
  
 
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<h3>Progress</h3>
 
<h3>Progress</h3>
 
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* Charted the logic of the wizard interface and created a development plan with Steve Pieper.
 
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* Made the lesion segmentation module available as a downloadable extension.  This obviates the need to add the source code to the Slicer repository.
 +
* Met with the white matter lesion segmentation project group from UNC / GE to exchange data and discuss methods.
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* Updated tutorial reflecting feedback from dissemination core.
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* Improved testing coverage of lesion segmentation tools.
 
</div>
 
</div>
 
</div>
 
</div>
  
 
<div style="width: 970%; float: left;">
 
<div style="width: 970%; float: left;">
 
==References==
 
*
 
</div>
 

Latest revision as of 13:54, 26 June 2009

Home < 2009 Summer Project Week Lupus Lesion Segmentation

Key Investigators

  • MRN: H. Jeremy Bockholt, Mark Scully
  • Isomics: Steve Pieper

Objective

To create an end-to-end Lupus lesion segmentation and analysis pipeline that can work in both an automated and semi-supervised fashion.

See our Roadmap for more details.

Approach, Plan

Our approach involves the combination of morphometric features with a non-linear classifier in order to capture more of the gestalt properties a human rater uses when segmenting Lupus lesions.

Our plan for the project week is to:

  • Work with Steve Pieper to implement the wizard interface to the lesion analysis module to make the segmentation process easier.
  • Refactor the lesion analysis code and integrate it with the Slicer code repository so it is built with Slicer.
  • Meet with the white matter lesion segmentation group to discuss overlap.

Progress

  • Charted the logic of the wizard interface and created a development plan with Steve Pieper.
  • Made the lesion segmentation module available as a downloadable extension. This obviates the need to add the source code to the Slicer repository.
  • Met with the white matter lesion segmentation project group from UNC / GE to exchange data and discuss methods.
  • Updated tutorial reflecting feedback from dissemination core.
  • Improved testing coverage of lesion segmentation tools.