Difference between revisions of "2009 Summer Project Week Slicer3 Brainlab Introduction"

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Image:PW2009-v3.png|[[2009_Summer_Project_Week|Project Week Main Page]]
 
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Image:Slicer_dti_seeding_or.jpg|Slicer3 in OR for fiducial seeding of DTI tractography
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Image:Slicer_dti_seeding.png|Slicer3 fiducial seeding of DTI tractography
 
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==Key Investigators==
 
==Key Investigators==
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* UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
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* BWH: Haiying Liu, Isaiah Norton
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* Utah: Tom Fletcher, Ross Whitaker
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* UCLA: Nathan Hageman
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<h3>Objective</h3>
 
<h3>Objective</h3>
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We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison.
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Demonstrate how we integrate BrainLab, BioImage Suite and Slicer3 to perform fiducial seeding of DTI tractography in Slicer3. The demo will be happening in BWH OR.
  
 
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<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
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Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below.  The main challenge to this approach is <foo>.
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Slicer3, BioImage Suite and BrainLab will be connected through a router in BWH OR. BioImage Suite will be a "bridge" between Slicer3 and BrainLab for data communication.
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Our plan for the project week is to first try out <bar>,...
 
 
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<h3>Progress</h3>
 
<h3>Progress</h3>
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Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure|DTI Software Infrastructure]] project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.
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The integrated system has been used in BWH OR for 6 neurosurgical cases.
  
 
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Revision as of 19:17, 3 June 2009

Home < 2009 Summer Project Week Slicer3 Brainlab Introduction

  • Slicer3 in OR for fiducial seeding of DTI tractography

  • Slicer3 fiducial seeding of DTI tractography

Key Investigators

  • BWH: Haiying Liu, Isaiah Norton
  • UCLA: Nathan Hageman

Objective

Demonstrate how we integrate BrainLab, BioImage Suite and Slicer3 to perform fiducial seeding of DTI tractography in Slicer3. The demo will be happening in BWH OR.

Approach, Plan

Slicer3, BioImage Suite and BrainLab will be connected through a router in BWH OR. BioImage Suite will be a "bridge" between Slicer3 and BrainLab for data communication.

Progress

The integrated system has been used in BWH OR for 6 neurosurgical cases.

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