2009 Summer Project Week Slicer3 Brainlab Introduction

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Key Investigators

  • BWH: Haiying Liu, Isaiah Norton, Junichi Tokuda, Alex Golby, Noby Hata, Tina Kapur, Haytham Elhawary
  • Isomics: Steve Pieper
  • Yale: Xenios Papademetris
  • BrainLab: Pratik Patel
  • UCLA: Nathan Hageman


Introduce and demonstrate how we integrate BrainLab, BioImage Suite and Slicer3 to perform fiducial seeding of DTI tractography in Slicer3.

Approach, Plan

  • Slicer3, BioImage Suite and BrainLab will be connected through a router in BWH OR. BioImage Suite will be a "bridge" between Slicer3 and BrainLab for data communication.
  • It's probably a good idea to show step by step how we set up the system. Instructions can also be found here at: https://www.slicer.org/wiki/Slicer3:BrainLab_Integration


  • Performed demonstration (with great help from Yale team and BrainLab) this week.
  • Five participants.
  • Launching BWH-UCLA collaboration based this work.