Difference between revisions of "2010 Summer Project Week Cortical Thickness Analysis"
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Image:MeshBasedCortThick_CorticalThickness.jpg|Cortical thickness on white matter surface | Image:MeshBasedCortThick_CorticalThickness.jpg|Cortical thickness on white matter surface | ||
Image:MeshBasedCortThick_SulcalDepth.jpg|Sucal depth on genus-zero cortical surface | Image:MeshBasedCortThick_SulcalDepth.jpg|Sucal depth on genus-zero cortical surface | ||
Revision as of 21:43, 15 June 2010
Home < 2010 Summer Project Week Cortical Thickness Analysis
Cortical thickness on white matter surface
Sucal depth on genus-zero cortical surface
Particles on inflated genus-zero cortical surface
Key Investigators
- UNC: Clement Vachet, Heather Cody Hazlett, Martin Styner
Objective
We would like to create end-to-end applications within Slicer3 allowing individual and group analysis of regional (voxel-based) and local (mesh-based) cortical thickness.
Such a workflow applied to the young brain (2-4 years old) is our goal in order to start a longitudinal study of early brain development in autism (UNC DBP).
See our Roadmap for more details.
Approach, Plan
Our approach is described in the following wiki pages:
Our plan for the project week is to:
- Follow-up on ARCTIC: Make it directly available as a 3D Slicer extension on MAC (compilation issues apparently)
- Follow-up on GAMBIT: continue its developmenent, e.g by prodiving new 3D Slicer MRML scenes for quality control
Progress
Delivery Mechanism
This work will be delivered to the NA-MIC Kit as a:
- ITK Module
- Slicer Module
- Built-in
- Extension -- commandline - YES
- Extension -- loadable
- Other (Please specify)
References
- I. Oguz, M. Niethammer, J. Cates, R. Whitaker, T. Fletcher, C. Vachet, and M. Styner, Cortical Correspondence with Probabilistic Fiber Connectivity, Information Processing in Medical Imaging, IPMI 2009, LNCS, in print.
- H.C. Hazlett, C. Vachet, C. Mathieu, M. Styner, J. Piven, Use of the Slicer3 Toolkit to Produce Regional Cortical Thickness Measurement of Pediatric MRI Data, presented at the 8th Annual International Meeting for Autism Research (IMFAR) Chicago, IL 2009.
- C. Vachet, H.C. Hazlett, M. Niethammer, I. Oguz, J.Cates, R. Whitaker, J. Piven, M. Styner, Mesh-based Local Cortical Thickness Framework, UNC Radiology Research Day 2010 abstract
- C. Mathieu, C. Vachet, H.C. Hazlett, G. Geric, J. Piven, and M. Styner, ARCTIC – Automatic Regional Cortical ThICkness Tool, UNC Radiology Research Day 2009 abstract
