Difference between revisions of "2010 Winter Project Week TubularTreeSeg"

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Image:PW-SLC2010.png|[[2010_Winter_Project_Week#Projects|Projects List]]
 
Image:PW-SLC2010.png|[[2010_Winter_Project_Week#Projects|Projects List]]
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Image:MohanGT-TubSegSlicerModule-IntegrationResult1.png|Snapshot of Tubular Surface Segmentation framework as a Slicer module, and obtained result
 
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==Key Investigators==
 
==Key Investigators==
* Vandana Mohan (Georgia Tech)
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* Vandana Mohan, Allen Tannenbaum (Georgia Tech)
 
* Marek Kubicki (BWH)
 
* Marek Kubicki (BWH)
  
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<h3>Progress</h3>
 
<h3>Progress</h3>
The algorithm is available in MATLAB with parts of the framework as C code (via mex).  
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* The algorithm is available in MATLAB with parts of the framework as C code (via mex).
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* During winter project week 2010: Framework integrated into Slicer as MATLAB module. Tested for CB segmentation. (See above image for snapshot of module view and result from Slicer.)
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* Next steps: Enable branching detection in framework, and test on vessel segmentation.
  
 
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Latest revision as of 16:34, 8 January 2010

Home < 2010 Winter Project Week TubularTreeSeg


Key Investigators

  • Vandana Mohan, Allen Tannenbaum (Georgia Tech)
  • Marek Kubicki (BWH)

Objective

Implement a Slicer module for the Tubular Tree segmentation framework of Mohan et al.

Approach, Plan

Implement as a command-line module via integration of current MATLAB implementation.

Progress

  • The algorithm is available in MATLAB with parts of the framework as C code (via mex).
  • During winter project week 2010: Framework integrated into Slicer as MATLAB module. Tested for CB segmentation. (See above image for snapshot of module view and result from Slicer.)
  • Next steps: Enable branching detection in framework, and test on vessel segmentation.

References

"Tubular Surface Segmentation for extracting anatomical structures from medical imagery"; Vandana Mohan, Ganesh Sundaramoorthi and Allen Tannenbaum; IEEE Transactions in Medical Imaging (in review)