Difference between revisions of "2011 Winter Project Week:Breakout Slicer with Ron"

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'''Moderator: Ron Kikinis'''
 
'''Moderator: Ron Kikinis'''
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=Introduction=
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*This is an advanced topic presentation on Slicer abilities. The intention is to familiarize the NA-MIC community with Slicer abilities.
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*You have mastered the introductions and you are hungry for more.... :)
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**This means that we expect you to at least have worked through the [http://www.slicer.org/slicerWiki/index.php/Slicer_3.6:Training Core Tutorials] before this class.
 +
*Ron and the creators of modules will show you advanced capabilities in Slicer 3.6
 
=Logistics=
 
=Logistics=
 
*What: Advanced capabilities in Slicer
 
*What: Advanced capabilities in Slicer
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*Where: Room XXXX
 
*Where: Room XXXX
  
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=Introduction=
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=Data=
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*This is an advanced topic presentation on Slicer abilities. The intention is to familiarize the NA-MIC community with Slicer abilities.
 
−
*You have mastered the introductions and you are hungry for more.... :)
 
−
**This means that we expect you to at least have worked through the [http://www.slicer.org/slicerWiki/index.php/Slicer_3.6:Training Core Tutorials] before this class.
 
−
*Ron and the creators of modules will show you advanced capabilities in Slicer 3.6
 
−
 
 
−
=Preliminary Program=
 
−
==Data==
 
 
<gallery caption="Image data used" widths="200px" heights="200px" perrow="3">
 
<gallery caption="Image data used" widths="200px" heights="200px" perrow="3">
 
image:Central.xnat.org-Case-40.png|[http://central.xnat.org/app/action/DisplayItemAction/search_element/xnat%3AmrSessionData/search_field/xnat%3AmrSessionData.ID/search_value/CENTRAL_E00893/popup/false/project/IGT_FMRI_NEURO Case 40] from the fMRI neurosurgery data set on central.xnat.org
 
image:Central.xnat.org-Case-40.png|[http://central.xnat.org/app/action/DisplayItemAction/search_element/xnat%3AmrSessionData/search_field/xnat%3AmrSessionData.ID/search_value/CENTRAL_E00893/popup/false/project/IGT_FMRI_NEURO Case 40] from the fMRI neurosurgery data set on central.xnat.org
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</gallery>
 
</gallery>
  
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==Demos==
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=Preliminary Program=
 
*10 minutes or less per segment
 
*10 minutes or less per segment
 
*Registration (Dominik Meier)
 
*Registration (Dominik Meier)

Revision as of 13:46, 17 November 2010

Home < 2011 Winter Project Week:Breakout Slicer with Ron
 Back to  Project Week Agenda

Moderator: Ron Kikinis

Introduction

  • This is an advanced topic presentation on Slicer abilities. The intention is to familiarize the NA-MIC community with Slicer abilities.
  • You have mastered the introductions and you are hungry for more.... :)
    • This means that we expect you to at least have worked through the Core Tutorials before this class.
  • Ron and the creators of modules will show you advanced capabilities in Slicer 3.6

Logistics

  • What: Advanced capabilities in Slicer
  • Who: All the new DBP engineers, all the participants new to NA-MIC
  • When: Wednesday afternoon: 1pm through 3pm
  • Where: Room XXXX

Data

  • Image data used

  • Case 40 from the fMRI neurosurgery data set on central.xnat.org

  • T1 Weighted SPGR image

  • T2 weighted Bzero image derived from the DWI acquisition

  • FLAIR image

  • SPGR after injection of Gd

  • DTI color by orientation overlayed over T2 baseline

Preliminary Program

  • 10 minutes or less per segment
  • Registration (Dominik Meier)
  • Compare view (Jim Miller)
  • Scenesnapshots (Alex Yarmarkovic)
  • Interactive editor (Steve Pieper)
  • Simple measurements and fiducials (Nicole Aucoin)
  • DTI processing (Alex Yarmarkovic, Demian Wasserman)
  • Volume Cropping (Andrey Fedorov)
  • Keyboard and mouse shortcuts (Steve Pieper)
  • Volume Rendering (Yanling Liu/Alex Yarmarkovic)
  • EM segmentation (Kilian Pohl, Marcel Prastawa)

Attendees

  1. Ron Kikinis
  2. Steve Pieper
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