Difference between revisions of "2011 Winter Project Week:Breakout Slicer with Ron"
From NAMIC Wiki
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=Preliminary Program= | =Preliminary Program= | ||
*10 minutes or less per segment | *10 minutes or less per segment | ||
| − | *Registration (Dominik Meier) | + | *Comply with [http://www.slicer.org/slicerWiki/index.php/Documentation-Rons-Rules-For-Tools Rons Rules for Tools] |
| + | *Registration (Dominik Meier, Hans Johnson) | ||
| + | **Register everything to the SPGR data | ||
| + | **Resample as needed (DTI, T2 Baseline) | ||
*Compareview (Jim Miller) | *Compareview (Jim Miller) | ||
*Scenesnapshots (Wendy Plesniak, Alex Yarmarkovic) | *Scenesnapshots (Wendy Plesniak, Alex Yarmarkovic) | ||
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*Keyboard and mouse shortcuts (Steve Pieper) | *Keyboard and mouse shortcuts (Steve Pieper) | ||
*Volume Rendering (Yanling Liu/Alex Yarmarkovic) | *Volume Rendering (Yanling Liu/Alex Yarmarkovic) | ||
| − | *EM segmentation (Kilian Pohl | + | *EM segmentation (Kilian Pohl) |
=Attendees= | =Attendees= | ||
#Ron Kikinis | #Ron Kikinis | ||
#Steve Pieper | #Steve Pieper | ||
Revision as of 13:59, 17 November 2010
Home < 2011 Winter Project Week:Breakout Slicer with RonBack to Project Week Agenda
Moderator: Ron Kikinis
Introduction
- This is an advanced topic presentation on Slicer abilities. The intention is to familiarize the NA-MIC community with Slicer abilities.
- You have mastered the introductions and you are hungry for more.... :)
- This means that we expect you to at least have worked through the Core Tutorials before this class.
- Ron and the creators of modules will show you advanced capabilities in Slicer 3.6
Logistics
- What: Advanced capabilities in Slicer
- Who: All the new DBP engineers, all the participants new to NA-MIC
- When: Wednesday afternoon: 1pm through 3pm
- Where: Room XXXX
Data
- Image data used
Case 40 from the fMRI neurosurgery data set on central.xnat.org
T1 Weighted SPGR image
T2 weighted Bzero image derived from the DWI acquisition
FLAIR image
SPGR after injection of Gd
DTI color by orientation overlayed over T2 baseline
Preliminary Program
- 10 minutes or less per segment
- Comply with Rons Rules for Tools
- Registration (Dominik Meier, Hans Johnson)
- Register everything to the SPGR data
- Resample as needed (DTI, T2 Baseline)
- Compareview (Jim Miller)
- Scenesnapshots (Wendy Plesniak, Alex Yarmarkovic)
- Simple measurements and fiducials (Nicole Aucoin)
- Interactive editor (Steve Pieper)
- Fast segmenters: Fast Marching, RSS, GrowCutSegment (Andrey Fedorov, Yi Gao, Harini Veeraraghavan)
- DTI processing (Alex Yarmarkovic, Demian Wasserman)
- Volume Cropping (Andrey Fedorov)
- Keyboard and mouse shortcuts (Steve Pieper)
- Volume Rendering (Yanling Liu/Alex Yarmarkovic)
- EM segmentation (Kilian Pohl)
Attendees
- Ron Kikinis
- Steve Pieper
