Difference between revisions of "2012 Summer Project Week:ANTS Registation"

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==Key Investigators==
 
==Key Investigators==
 
* Iowa: Dave Welch, Hans Johnson
 
* Iowa: Dave Welch, Hans Johnson
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* Penn State: Brian Avants, Nick Tustison
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* Penn State: Brian Avants, Gang Song, Nick Tustison
  
 
<div style="margin: 20px;">
 
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This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)
 
This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)
  
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#ITK Module
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#ITK Module  
 
#Slicer Module
 
#Slicer Module
 
##Built-in
 
##Built-in
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##Extension -- commandline
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##Extension -- commandline YES
 
##Extension -- loadable
 
##Extension -- loadable
 
#Other (Please specify)
 
#Other (Please specify)
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==References==
 
==References==
 
* [http://www.picsl.upenn.edu/ANTS/ ANTS webpage: http://www.picsl.upenn.edu/ANTS/]
 
* [http://www.picsl.upenn.edu/ANTS/ ANTS webpage: http://www.picsl.upenn.edu/ANTS/]
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* Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
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* Avants B, Tustison N, and Song G, €œANTS: Open-Source Tools for Normalization And Neuroanatomy,€ IEEE Transactions on Medical Imaging, pp. 1-11.
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* Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. [http://www.na-mic.org/publications/item/view/292 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
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* Avants B B, Tustison N T, Song G, Cook P A, Klein A, and Gee J C, €œA reproducible evaluation of ANTs similarity metric performance in brain image registration.,€ NeuroImage, vol. 54, no. 3, pp. 2033-44, Feb. 2011.
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* Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. [http://www.na-mic.org/publications/item/view/1122 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.
 
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* Goodlett C, Corouge I, Jomier M, Gerig G, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .
 
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Revision as of 20:16, 22 May 2012

Home < 2012 Summer Project Week:ANTS Registation

  • ANTS Brain registration to population-based template

Key Investigators

  • Iowa: Dave Welch, Hans Johnson
  • Penn State: Brian Avants, Gang Song, Nick Tustison

Objective

We are developing an ANTS-based registration module.

Approach, Plan

Our approach for implementing ANTS registration will be to create a command line module and integrate ANTS into the Slicer build process, if possible.

Progress

Delivery Mechanism

This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)

  1. ITK Module
  2. Slicer Module
    1. Built-in
    2. Extension -- commandline YES
    3. Extension -- loadable
  3. Other (Please specify)

References

  • ANTS webpage: http://www.picsl.upenn.edu/ANTS/
  • Avants B, Tustison N, and Song G, €œANTS: Open-Source Tools for Normalization And Neuroanatomy,€ IEEE Transactions on Medical Imaging, pp. 1-11.
  • Avants B B, Tustison N T, Song G, Cook P A, Klein A, and Gee J C, €œA reproducible evaluation of ANTs similarity metric performance in brain image registration.,€ NeuroImage, vol. 54, no. 3, pp. 2033-44, Feb. 2011.
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